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Tbr1 Function in Cell Fate and Synaptogenesis

May 05, 2023
  • 00:03No, no, we'll talk. Got it, got it.
  • 00:11And the the very generous introductions,
  • 00:17sorry for the 18 issues.
  • 00:20Look at this, Alexa.
  • 00:22Nicole might be able to do that.
  • 00:23You try, you know,
  • 00:25that don't gloat this.
  • 00:27You hear a lot of disasters out there.
  • 00:30Golden Gate Park is still fine
  • 00:35and this is a view of Golden
  • 00:37Gate Park for the hill were at
  • 00:40UCSF Mount Parnassus campuses.
  • 00:44So I'll be telling you about a
  • 00:46transcription factor called TV R1 which
  • 00:49is really important and early portable
  • 00:52development in self based specification.
  • 00:55But as you'll see it has several roles
  • 00:57as time moves on in development.
  • 01:00Roles that I think are perhaps,
  • 01:02maybe even more remain to cognitive
  • 01:06disorders and then psychiatric disorders,
  • 01:11in particular to autism.
  • 01:12But I think it could be and could be
  • 01:16thinking about other neuropsychiatric
  • 01:19illnesses as well.
  • 01:21Well, give a little historical
  • 01:23perspective to this.
  • 01:24To those of you who've known me this long,
  • 01:27it's about 36 years ago.
  • 01:30Began a screen for genes that are.
  • 01:32We were hoping to find genes that
  • 01:35are expressed much more during
  • 01:37development of the forebrain
  • 01:38than in the adult forebrain,
  • 01:40with a simple idea that if they're
  • 01:42expressed really highly during development,
  • 01:44maybe they're important for development.
  • 01:47And we use a technique oldfashioned
  • 01:49technique called subtractive vibration
  • 01:51with directional CD and A libraries we
  • 01:54compared in the mouse and embryonic day 15.
  • 01:57Forebrain 2 an adult forebrain,
  • 02:04and using that technique we found a
  • 02:06gene which we called healing Cell
  • 02:08Phone Embryonic Subtraction #1,
  • 02:11or Test one, which unfortunately had
  • 02:14to have its name change in DL X2.
  • 02:16I'm not it's not so bad about
  • 02:18losing the test one for that reason,
  • 02:20but you'll see in a second
  • 02:21why it was sad to lose that.
  • 02:28Test 1 encodes A homeo
  • 02:31domain transcription factor.
  • 02:33They're probably the most common
  • 02:34kinds of transcription factors
  • 02:36that are important in self fate
  • 02:37regulation during development.
  • 02:39And this is a picture of the
  • 02:42embryonic mouse brain and the
  • 02:44white stuff in the embryonic mouse
  • 02:46brain shows where the RNA for test
  • 02:48one is very strongly expressed
  • 02:52here in the. Ganglia, primordia,
  • 02:54this big lump of cells called
  • 02:57the ganglionic eminences,
  • 02:58which is below the cortex,
  • 02:59which is not labeled,
  • 03:01and it's also very strongly
  • 03:03expressed in the Pantera,
  • 03:04diencephalan and hypothalamus. Of
  • 03:09course, when we did this first experiment,
  • 03:10we had no idea what we were looking
  • 03:12at because we had in medical school,
  • 03:14you don't have any training in what
  • 03:16the embryonic brain looks like.
  • 03:17At least we didn't have poshco
  • 03:20at standards we didn't Poshco.
  • 03:21I might have known what this is, but.
  • 03:23No, nobody who I working with knew
  • 03:26what any of these things were.
  • 03:30And then I visited jail in 1990
  • 03:33when I met for the first time.
  • 03:36At least let's say 10 of you who are
  • 03:38in this room and I've been friends
  • 03:40with you for that long and I gave my
  • 03:43first talk on Test 1 / D L X2 and maybe
  • 03:46one of you or two remember that talk.
  • 03:49But. It was a huge experience for
  • 03:51me to to come and meet you all.
  • 03:54I almost took a job here and it
  • 03:58was sad not to be able to do that.
  • 04:00It was gratifying that I have
  • 04:03life not lifelong,
  • 04:04but half my lifelong friends that are
  • 04:07who I met that day and have continued to
  • 04:10see over the years and in many venues.
  • 04:17We we went through our everyonic
  • 04:19subtraction looking for other
  • 04:20interesting genes and found many others.
  • 04:22The the second most interesting
  • 04:24in my opinion was test 56.
  • 04:26So that's the 56 gene that we
  • 04:29looked at and we named it a TB R1.
  • 04:34Where T encephalon or A2 on cephalon
  • 04:38express brain gene one or T box
  • 04:40brain gene one has many reasons
  • 04:43for its name and you'll see what
  • 04:45its real reason is in a second.
  • 04:49So unlike the DLX gene which was
  • 04:52expressed in the basal ganglia,
  • 04:54tea bear one not expressed in the basal
  • 04:57ganglia it's it surrounds the basal
  • 05:00ganglia expressed in the cerebral
  • 05:02cortex and then a little domain
  • 05:05in the that was called eminential
  • 05:07palamide and then part of the
  • 05:10hypothallus and and as it turned out.
  • 05:16The DLX gene is expressed in
  • 05:19progenitors and in Gabourgic
  • 05:21neurons and in Gabourgic neurons.
  • 05:24So DLX expression is pretty much
  • 05:26the same as it as a gene like
  • 05:28flutamic acid D carboxylase or
  • 05:31the vesicular GABA transporter.
  • 05:33They're in the same cells.
  • 05:34In fact, DLX regulates these
  • 05:36fundamental Gabourgic properties
  • 05:38wherever you are in the forebrain,
  • 05:41but the rest of the brain,
  • 05:43it's not expressed,
  • 05:44so it's a forebrain specific.
  • 05:46Transcription factor that's
  • 05:48involved with gabiergic cell fate,
  • 05:52differentiation and function,
  • 05:55and TV R1, by contrast,
  • 05:57is only in glutamateurgic neurons.
  • 06:00And so we began to get the idea
  • 06:02that you can have transcriptional
  • 06:04pathways that separate out these
  • 06:06two fundamental cell types,
  • 06:08excitatory cells and inhibitory cells.
  • 06:10And by differentially controlling
  • 06:12the activity of the DLX or TV R1,
  • 06:15you can change the balance of
  • 06:17of the function of excitatory
  • 06:20or inhibitory neurons.
  • 06:28And these two genes were became the
  • 06:30foundation of much of the work that
  • 06:32I've done the last 30 years at UCSL.
  • 06:36So the real reason we named
  • 06:38the genes what they were.
  • 06:40Is because my daughter's name is Tess.
  • 06:44That's Test 1. My my son's name is Thomas,
  • 06:47that's Thomas Braden Rubenstein.
  • 06:50That's why they have their names.
  • 06:51That's why I was upset that
  • 06:53the test turned into DL X2.
  • 06:56She answers.
  • 06:56She answers the both now.
  • 07:02So I'm going to start by telling
  • 07:04you I'm only going to be telling
  • 07:05you about TB R1 in this talk.
  • 07:07I'm going to tell you about TBR one's.
  • 07:10Function from the very beginning
  • 07:13of making the cerebral cortex
  • 07:16into into an adultery,
  • 07:18even through something called
  • 07:19the grandpa mouse experiment.
  • 07:22So kind of a life lifelong function of
  • 07:25T ver one in controlling many parts
  • 07:27of how you make cortical neurons.
  • 07:30They're giving their identity
  • 07:32and connections. I'm
  • 07:38going to start by showing you something.
  • 07:40Pictures of where T bear ones expressed
  • 07:42because although it's kind of boring
  • 07:44their anatomy, it sets the stage
  • 07:46for thinking about what it does. So
  • 07:52here's the In teaching hybridization done
  • 07:54by the Allenbrae Institute of T bear one,
  • 07:56the brown black cells are T bear one
  • 08:00expressing cells, and you can see
  • 08:02it's only in the cerebral cortex.
  • 08:04And in this part of the hypothalamus,
  • 08:07it's essentially nowhere else.
  • 08:10In the central nervous system,
  • 08:11except for some deep cerebellar nuclei.
  • 08:15So it's highly highly specific for the
  • 08:18for the forebrain, as I mentioned,
  • 08:21it's only in citatory neurons in the cortex,
  • 08:28and it's asking you to sign into Dropbox.
  • 08:34And within the developing cortex
  • 08:36it's not in the progenitors,
  • 08:38so it's not in dividing cells.
  • 08:40It turns on once the cells become post
  • 08:43mitotic and are migrating and we call
  • 08:46the intermediate zone and then it those
  • 08:49cells coalesce and form the developing
  • 08:51cortical plate and it's expressing
  • 08:54the earliest born cortical neurons.
  • 08:56I'll ask posture what those are.
  • 08:57Now earliest born critical neurons are the
  • 09:01Cahabretzia cells, the subplate and layer 6.
  • 09:05So what you're looking at at
  • 09:07this stage is probably 15 or so.
  • 09:09Primarily layer 6 and subplate and cahabats.
  • 09:12Your cells all coalesced in
  • 09:14this early cortical plate.
  • 09:17You look at the specialty bear one.
  • 09:20In the neonatal mouse cortex,
  • 09:23expression is concentrated in layer 6.
  • 09:27If you look carefully in the rosel parts
  • 09:30of layer five you can see scattered cells.
  • 09:33So at this stage it's primarily
  • 09:35layer 6 and layer 5.
  • 09:39I don't think it's ever in layer 4.
  • 09:40I'm not sure about.
  • 09:42Then I can correct me.
  • 09:43But then it turns on in layer 2-3,
  • 09:45later on
  • 09:49again, but only in excitatory neurons.
  • 09:53And then in an adult Peter,
  • 09:54one expression is maintained
  • 09:56again most strongly in layer 6,
  • 09:59in about half the cells in layer 5:00,
  • 10:01and then in many cells in layers 2 and three.
  • 10:04And I'll tell you mainly about
  • 10:05what TB I one is doing in layer
  • 10:076 and a little bit about what TB
  • 10:09I one's doing in layer 5,
  • 10:10and I don't know what TB I
  • 10:11one's doing in layer 2-3 yet.
  • 10:17So our one of our first papers
  • 10:19on TB I-1 function shown here.
  • 10:22The title says everything about it.
  • 10:24It regulates differentiation
  • 10:25of the preplate in layer 6.
  • 10:27The preplate is basically
  • 10:29the subplate and the car.
  • 10:31That's just cells and there.
  • 10:35It's the several things.
  • 10:39Within Chen, we showed that TB R1
  • 10:45controls the identity of layer 6.
  • 10:48So ordinarily this transcription factor
  • 10:51C tip 2 is in layer 5 and not layer 6,
  • 10:54But in the TB R1 constituent
  • 10:56of loss of function unit,
  • 10:58this transcription factor C tip
  • 11:012 is now expressed in layer 6.
  • 11:03So TB R1 has a major role in depressing
  • 11:07layer 5 identity in layer 6 cells,
  • 11:11and if you start messing around
  • 11:13with layer 6 in this way,
  • 11:14a lot of bad things happen.
  • 11:17I'll just tell you one of them.
  • 11:19Ordinarily layer 6 is the main
  • 11:21output for axons that grow
  • 11:23and innervate the thalamus,
  • 11:24and that's what's shown in this picture here.
  • 11:26And then the TB R1 mutant.
  • 11:28The axons are made,
  • 11:30but they stop in the basal ganglia.
  • 11:32Around the boundary with the hypothalamus
  • 11:35and they never innovate the thalamus.
  • 11:37So Tegre was really important in
  • 11:41the program for the connection
  • 11:43of the cortex to the thalamus.
  • 11:48A very brief summary of what TR does
  • 11:51does early at E 10.5 is important
  • 11:54for generations of rexial cells.
  • 11:56These cells are fundamental for making the
  • 11:59laminar organization of the frebal cortex.
  • 12:02That E 12.5, it's really important
  • 12:04we think for the fate of layer 6,
  • 12:07and we begin to think that the fate switch
  • 12:10for layer 5 May start as early as E 12.5.
  • 12:13And it's important for the connections
  • 12:16of the cortex to the thalamus which
  • 12:19is takes place in this interval
  • 12:21between 12.5 and let's say 16.5.
  • 12:26So this is that's what happens
  • 12:27with you have a T01.
  • 12:29Constitutive loss of function unit i.e.
  • 12:31There's no T row one protein at all.
  • 12:33All these bad things happens
  • 12:35to to the cortex.
  • 12:38So the bottom line is T row one.
  • 12:41In T row one, layer 6 neurons
  • 12:44transformed into layer 5 type similar.
  • 12:48Not exactly, but pretty close to being
  • 12:50a layer 5 type cortical neuron. And
  • 12:56this is where I left it in the mid.
  • 12:59Around 2005, 2010 or so and then I
  • 13:05worked from Yale from Stefan Sanders,
  • 13:08Nenod and and Matt State showed that a
  • 13:12mutation of TB R1 was highly implicated
  • 13:15in causing some forms of autism.
  • 13:18And so when Matt came to UCSF he and
  • 13:21then talked about this and he told me
  • 13:23about the result ahead of time and let me
  • 13:26get involved back into the TB R1 story.
  • 13:28And that helped fund me getting
  • 13:30back into TB R1 at work.
  • 13:35So with that impetus I decided to look
  • 13:40to see if I could understand how TB R1
  • 13:43mutations might increase the risk for autism.
  • 13:47And part of that was to begin to
  • 13:49look at mice that are heterozygote
  • 13:50for the loss of function tier one,
  • 13:52because the humans who have autism or
  • 13:56heterozygotes have loss of function alleles.
  • 13:59And then the you know the Hail Mary was
  • 14:03maybe find some possible treatment so
  • 14:05that but that was that was a pipe dream
  • 14:12and this work was done primarily by
  • 14:14a post doc named Sivash Darbondy.
  • 14:16And Sivash's first paper on this
  • 14:18subject is this this one down here.
  • 14:28OK, so for this experiment we
  • 14:29decided to not use a constituent
  • 14:32loss of function allele.
  • 14:33We wanted to make a conditional mutation
  • 14:36because we wanted to begin to dissect
  • 14:38what T bear was was doing at different
  • 14:40times and different cell types.
  • 14:43So for that purpose we made what's
  • 14:46no call the flopsed allele,
  • 14:48which just means that we're we now
  • 14:51genetically can manipulate when
  • 14:53we delete T bear one.
  • 14:55And this was done with the
  • 14:57collaboration Matt State and Ben
  • 14:59Chen and Ben's at Santa Cruz.
  • 15:04So having built a floss the wheel for
  • 15:07TBO and then we wanted to find the
  • 15:10appropriate 3 recombinations so that we
  • 15:13could delete it where and when we wanted.
  • 15:16And we chose two layer specific
  • 15:193 recombinations that turned
  • 15:21on around every like day 18.5.
  • 15:23Which is about 8 days after TB R1 turns on.
  • 15:27So these mice will be developing with
  • 15:30normal TB R1 until just before birth.
  • 15:33So all the things that I've been
  • 15:35telling you about that go wrong with
  • 15:37TB R1 in the null mutant should not
  • 15:40or may not happen in this mutant,
  • 15:42but we will. We'll find out.
  • 15:44But he goes.
  • 15:47So one tree that we use is called.
  • 15:49Doesn't really matter,
  • 15:50it's called NTS R1 Creek.
  • 15:52And it's really good at deleting tibro
  • 15:55one in cortical layer 6 and again
  • 15:57it turns around on around E 18.5.
  • 16:02The other three we use is called
  • 16:05R BP4 Creed and it deletes tibro
  • 16:08one in layer 5 and nicely.
  • 16:11It also includes the prefrontal cortex.
  • 16:15The layer 6 creed is not active
  • 16:17in the in the prefrontal cortex
  • 16:19and we couldn't interrogate.
  • 16:20Cortex function in the layer 6,
  • 16:23but we could do it in the layer 5.
  • 16:25That'll come into play later in the talk.
  • 16:31So let me first tell you about the
  • 16:34conditional deletion of TB R1 in layer 6,
  • 16:37and I'll probably just be calling
  • 16:39these TBR one layer 6 mutants.
  • 16:42So we started off doing an RNARNA
  • 16:46sequencing and comparing the RNA levels.
  • 16:49And neonal cortex of wild type versus
  • 16:53the conditional layer 6 mutant.
  • 16:56And this pretty picture so-called
  • 16:59volcano plot shows genes that are
  • 17:01up regulated in red and genes
  • 17:03that are down regulated in blue.
  • 17:05So let's first look at the blue ones.
  • 17:07Hebrew one is down regulated.
  • 17:09Thank God because we deleted it.
  • 17:11It's RNA was normal.
  • 17:12That would look bad for our experiment.
  • 17:15OK, so we're off to a good start.
  • 17:18And one of the genes that's
  • 17:20most downregulated is T LE4,
  • 17:21which then I can tell you is
  • 17:24super important for layer 6.
  • 17:25So that's that was really good.
  • 17:28And then a gene that's upregulated.
  • 17:30And I can also tell you this Fez F2.
  • 17:33Fez F2 is a key regulator of layer 5
  • 17:36identity and it's expressed in layer 5.
  • 17:39But this is telling us already
  • 17:41that something's wrong with layer
  • 17:436 and it's missing normal levels
  • 17:45of T LE4 and has too much.
  • 17:47Layer 5 expression.
  • 17:48In it.
  • 17:54We did a bunch of in C twos using
  • 17:56probes based upon the genes that
  • 17:58were found in the RN A/C analysis,
  • 17:59and here's just two of them.
  • 18:01Both of them are markers of layer 6,
  • 18:05so Fox B2 and TT LE4.
  • 18:10They're strongly expressed in layer 6,
  • 18:12and very little in the case of
  • 18:14Fox B2 and superficial layers.
  • 18:16Killy 4 has this back when I don't
  • 18:18know if that's kill expression or not,
  • 18:20but the strong expression is in
  • 18:23layer six in the in the heterozygote
  • 18:27there's not much of an effect.
  • 18:29You might think there's a
  • 18:31could be a slight decrease,
  • 18:32particularly in this one,
  • 18:34but not a strong heterozygote effect.
  • 18:36But in the homozygote 5B2
  • 18:40expression is greatly reduced.
  • 18:42Until E4 expression is greatly reduced,
  • 18:44although not eliminated in the well,
  • 18:46the subplate and also a
  • 18:49superficial layer 6 okay.
  • 18:51So this is interesting because TV R1
  • 18:53has been there for eight days now,
  • 18:56we took it away for about 3 or 4 days and
  • 19:00you the layer 6 identity whittles away.
  • 19:03So TV R1 is not only required for initiation
  • 19:06of state specification of layer six,
  • 19:09you need to keep TV R1 there.
  • 19:12New Natalie in order to
  • 19:14maintain layer 6 identity.
  • 19:16We were surprised by this,
  • 19:17but that's what that's
  • 19:18that's the way it goes.
  • 19:24Now let's look at layer 5 markers.
  • 19:28There's this B CL11B which is same
  • 19:31as C tip 2 which I showed earlier.
  • 19:33Beautiful layer 5 expression lower
  • 19:36in layer 6 and Fez F2 almost almost
  • 19:40specific for layer five at this age.
  • 19:43Almost nothing in layer 6.
  • 19:45Now look at the heterozygote.
  • 19:46This is really surprising.
  • 19:47Let's just go straight to the Feds up two.
  • 19:51Here's the layer 5 expression.
  • 19:52Now in the heterozygote there is Feds
  • 19:55up two at reasonable levels in layer 6.
  • 19:59So even as a heterozygote,
  • 20:01your layer 5 is in trouble.
  • 20:02I'm sorry, your layer 6 is in trouble.
  • 20:04If you're a TBR 01,
  • 20:05no new and one can think about
  • 20:07the meaning of that for a human
  • 20:10who's heterozygote for TB 01.
  • 20:11Having a mixed identity of layer 6
  • 20:17and then this is the hobo
  • 20:18Zygo and you get this.
  • 20:20It looks like almost equivalent in
  • 20:21case of peasant 2 layer 5 and layer
  • 20:256 expression and similar for P CL11B.
  • 20:31So
  • 20:36I told you what early keyword
  • 20:38one function does over here on
  • 20:40the far on your far left when you
  • 20:42delete keyword one around 18.5.
  • 20:47Layer 6 takes on properties of layer five.
  • 20:51We don't know how long,
  • 20:53how far out that goes,
  • 20:54but it'll be just don't.
  • 20:55But we know that during this period
  • 20:59that they changes that molecular
  • 21:03possible fake changes prominent.
  • 21:10Okay. Now we wanted to look what's
  • 21:12what's the ramification of these changes
  • 21:14in transcription factor expression
  • 21:16on the cellular properties of the
  • 21:19of the layers mutant layer 6 cells.
  • 21:22So we've next looked at their dendrites.
  • 21:28Normally layer 6 cells have
  • 21:30this fascinating property.
  • 21:31I don't know if you can see it very well.
  • 21:33They're aprical dendrites wrote
  • 21:35to here in in the layer 5 and
  • 21:37they don't go into layer 6 much.
  • 21:39So there's. A very strong
  • 21:41regulation of dendrite properties.
  • 21:45In layer six they would have that
  • 21:48their little forest of dendrites
  • 21:50only go up halfway up the cortex.
  • 21:55On the other hand, in the TB R1
  • 21:58mutant this looks straight down.
  • 22:00Here many of their axons grow
  • 22:02all the way up to layer one,
  • 22:05this low pass and even in the heterozygote.
  • 22:09It's a it's a partially penetrate phenotype.
  • 22:12Some of these dendrites grow up there.
  • 22:15Ramification of that that now means
  • 22:16that layer 6 cells are going to
  • 22:18get inputs from places that they
  • 22:20never get inputs from before.
  • 22:22So that's going to change the wiring
  • 22:23diagram of the cortex and we'll
  • 22:26confuse the circuit functions.
  • 22:30Obviously we can use the circuit
  • 22:31functions of the cortex.
  • 22:36So with these conditional mutants,
  • 22:38we can see that heroin has a persistent
  • 22:42effect on repressing layer 5 identity,
  • 22:45which includes the layer 6 cells
  • 22:50send their dendrites to layer one,
  • 22:52which is a property of layer 5 cells.
  • 22:56So we have a molecular and cellular
  • 22:59transformation of layer 6 towards layer 5
  • 23:02identity in these conditional mutants and.
  • 23:05Partial phenotypes in the heterozygous
  • 23:13OK with Alex Nord we've looked at the
  • 23:18locations in the on the chromosomes where
  • 23:21the TB R1 transcription factor binds.
  • 23:23We've identified which promoters and which
  • 23:26candidate enhancers have TB R1 binding
  • 23:31and we able to.
  • 23:34Identify the canonical in vivo
  • 23:36T row and binding motif motifs.
  • 23:39There's there's a lot of variety
  • 23:42of this and there's a lot more
  • 23:44to do with to understand what
  • 23:45those different movies mean
  • 23:50based upon where keeper ones binding
  • 23:53on the chromosomes and the RNA changes
  • 23:57that happened at Tiro on mutants.
  • 24:00And through these genomic binding sites,
  • 24:02we can identify the candidate
  • 24:04enhancers for the genes that
  • 24:06whose expression has changed.
  • 24:09We can develop enhancer transcription
  • 24:11assays to test whether these enhancers
  • 24:14are in fact regulated by TBRO One.
  • 24:17Finding all of this data,
  • 24:18we've begun to define transcriptional
  • 24:21network regulated by TBRO One.
  • 24:24And here's a here's a cartoon showing
  • 24:26some of the things we've found.
  • 24:28The T row one functions both as an activator.
  • 24:31That's what these green arrows means,
  • 24:33as well as a repressor.
  • 24:35That's what the Red Arrows means.
  • 24:37We think that most of these
  • 24:42this pathway shown here are
  • 24:44direct T rowing functions,
  • 24:46not it could be also indirect,
  • 24:48but you think a lot of this is
  • 24:51direct and the genes that have
  • 24:54the double asterisks on them.
  • 24:57PC11A, OX B2, GRIN 2B,
  • 24:59WIN 7B, Box P1 are also autism
  • 25:06risk alleles risk genes,
  • 25:09so perhaps TB R1 is critical
  • 25:12in regulating many of the
  • 25:15D chains that cause autism.
  • 25:23So the summary of this first part of the
  • 25:27talk is that TB R1 is really important.
  • 25:30In cell identity, for excitatory
  • 25:33neurons of the cerebral cortex,
  • 25:35it's required to initiate and
  • 25:37to maintain layer 6 identity,
  • 25:39which then leads to the taking on of
  • 25:42layer 5 morphological properties,
  • 25:48the and we think that the layer and
  • 25:50and obviously molecular properties
  • 25:52and many of these tea bear one
  • 25:54targets are autism risk genes.
  • 26:01Okay. So now we went into
  • 26:03new territory for us.
  • 26:04We're very good at doing in C twos and
  • 26:06learning about the molecular changes.
  • 26:08Now we went to look at the synapses
  • 26:10in these mutant layer 6 cells
  • 26:14and synaptogenesis is most,
  • 26:16you know in the mouse takes
  • 26:19place postnatally being around
  • 26:21postnatal layer 5 and accelerating.
  • 26:23During the first week and second week,
  • 26:30what Sivas did was look at synapses
  • 26:34primarily in layer 5 because
  • 26:37in the wild type or layer six
  • 26:38don't go up to any other layers.
  • 26:40So we chose layer 5:00 during the
  • 26:42wild type to the conditional unit and
  • 26:45then we did immunofluorescence assays
  • 26:47for pre and post synaptic markers,
  • 26:50excitatory and inhibitory synapses.
  • 26:52And then measure the densities of the
  • 26:55synaptic process of these synaptic
  • 26:58elements as a function of length of the
  • 27:02Axon and or dendrite that we were measuring.
  • 27:08And we saw a very easy relate very
  • 27:10simple relationship that the density
  • 27:13of synaptic structures called
  • 27:15butans very wild type heterozygote
  • 27:19homozygote and we call it linear
  • 27:21but it decreases as a function of.
  • 27:24How much cheaper?
  • 27:24Or when you have and this was true for
  • 27:27both excitatory and inhibitory synapses,
  • 27:29both were greatly reduced and heterozygote
  • 27:31had the intermediate phenotype.
  • 27:38Then with Victa Sohal and his
  • 27:41graduate student Sarah Robinson.
  • 27:43The electrophysiology of these mutants,
  • 27:48and I won't show you a lot of squiggles,
  • 27:50I'll just tell you wild type.
  • 27:53And this was a normal squiggle and the
  • 27:56homozygote is very quiet and less activity.
  • 27:59The heterozygote was somewhere in between.
  • 28:04So being a TV on mutant is very
  • 28:07bad for your synaptic formation,
  • 28:10and since you have less synapses,
  • 28:11there's less activity.
  • 28:12That's not too surprised.
  • 28:16So now we add to all these other problems.
  • 28:19They have reduced excitatory and inhibitory
  • 28:22synaptic densities. And activities.
  • 28:27Now we're beginning to get a
  • 28:28little bit more psychiatric.
  • 28:29You can see these not only is the
  • 28:31identity of layer 6 messed up,
  • 28:33so the connectivity's bad,
  • 28:35that's not good.
  • 28:36But also the amount of input
  • 28:38being processed through the
  • 28:39mutant cells is greatly reduced.
  • 28:45So post Natal ETR ones required for
  • 28:47normal number of excitator inhibitory
  • 28:49synapsis onto layer 6 pyramidal neurons.
  • 28:55And then we wanted to know why is,
  • 28:57why are the number of synapses reduced?
  • 28:59And we think we have a grasp of that answer.
  • 29:04So we concentrated on one of the key
  • 29:08components at least of excitatory synapses,
  • 29:10which are the spines.
  • 29:12Is the structure on the dendrites of the
  • 29:15excitatory dendrites center of the neurons.
  • 29:18We use this fantastic conflict of microscopy.
  • 29:21System that has a computer hooked
  • 29:23up to it and what it does is it
  • 29:25gives you a picture like this where
  • 29:27the the dendrites are these white
  • 29:29beautiful guys and the spines are
  • 29:32colored blue by the computer.
  • 29:33Like I can understand this,
  • 29:36we can count blue blobs.
  • 29:39That's what a control looks like.
  • 29:41And the tibra on mutant
  • 29:47many fewer blue blobs.
  • 29:49Now the blue blobs are. Mature spines.
  • 29:52The immature spines are these thin,
  • 29:56thin, filamentous things.
  • 29:57So the mutant has fewer mature spines,
  • 30:00and I don't know if it has more,
  • 30:02but I think it does
  • 30:03filamentous immature spines.
  • 30:04So there's something wrong in the T barrel.
  • 30:071 dendrite to promote the maturation of its
  • 30:12immature spines to become mature spines,
  • 30:16and you need to have mature spines
  • 30:18for excitatory synapses of form.
  • 30:20I cannot say why the inhibitory synapses
  • 30:22are are having problems, but they
  • 30:29they. This is a qualification at 2 pages,
  • 30:33postnatal day five and postnatal 2021 of the
  • 30:37of the measuring these blue mature spines.
  • 30:41There's a wild type and here's a homozygote.
  • 30:44There might be fewer mature spines.
  • 30:47And then the later stages,
  • 30:48we looked at wild type heterozygote
  • 30:51homozygote and we again see this
  • 30:54quantitative effect not only in the
  • 30:56homozygote but in the heterozygote as well.
  • 31:03Then we wanted to see if we can
  • 31:05understand what might be a molecular
  • 31:07mechanism that underlies failure
  • 31:08and maturation of the spines.
  • 31:11We went back to our RNAC
  • 31:15and looked at some of the.
  • 31:17Genes that are up or down regulated
  • 31:21and I just point out one of them
  • 31:22because this is the one that turned
  • 31:23out to be the most useful which is
  • 31:25a protein called Win 7B to secreted
  • 31:28which early in development is super
  • 31:31important in regional specification
  • 31:33and selfate specification.
  • 31:34But Patricia Salinas several many years
  • 31:36ago showed how the wind proteins are
  • 31:39also important in synapse formation
  • 31:41and in Axon growth and and targeting.
  • 31:46Then there are a bunch of other
  • 31:48blue dots that are interesting as
  • 31:49well which I won't tell you about.
  • 31:53So when 7B is normally most strongly
  • 31:57expressive layer 6 and then
  • 32:00either when heterozygote may be
  • 32:04reduced and the homozygote greatly
  • 32:07reduced and then for some reason
  • 32:08top of the express in layer 2-3.
  • 32:11I don't understand that.
  • 32:12Let's just pay attention to the reduction
  • 32:15of T of Win 70 in in the in layer 6:00.
  • 32:21So we wanted to ask whether or
  • 32:23not we could restore synapses
  • 32:26by destroying Win 70 expression.
  • 32:28So we took a new Natal cortex,
  • 32:31wild type or mutant and dissected it off
  • 32:36and and dissociating and gruiting culture.
  • 32:40And then let those cultures mature for
  • 32:42about two weeks and then measure the
  • 32:45number of synapses in those culture
  • 32:47on to the layer 6 cells which would
  • 32:48be red because of the tea tomato,
  • 32:50which I didn't tell you about that
  • 32:52you can see which cells are mutant
  • 32:54that way we harvest days, day zero
  • 32:58at day one we transpect with the DNA
  • 33:03expression vector for win 7B and then.
  • 33:0914 days later we count synapse numbers
  • 33:13by these immunosum rest and sassay and
  • 33:15we did this with about 5 different genes
  • 33:18that were down regulating the T year only.
  • 33:21And in this case only one
  • 33:23of them showed big effect.
  • 33:25I'll show you one that did not
  • 33:27have an effect and one that did.
  • 33:28So this is the control experiment with no
  • 33:32transfection a wild type and homozygote.
  • 33:35This is just showing what we already
  • 33:37knew that there's decreased.
  • 33:38Synapses we transpected with CAD
  • 33:42here and eight which Josh Sainz
  • 33:44had shown was down regulated in
  • 33:46the retina of T VO1 mutants.
  • 33:48We thought maybe that might be important
  • 33:50it it didn't help and then when we use
  • 33:54Win 7B it showed nearly complete rescue.
  • 33:58That was our in vitro synapse assay.
  • 34:01We followed up with an in vivo assay
  • 34:04where we used a retrovirus vector.
  • 34:10Let's factor that only rest of
  • 34:12win 70 if the cells express free,
  • 34:14so we use the NTS. R1 mouse has the
  • 34:17pre and layer 6 and infect those and
  • 34:27so we infect the babies are born P0,
  • 34:31infected the next day at P1 and
  • 34:33then at P28 we sacrifice the
  • 34:36animal and stain them. And this is
  • 34:43this is a similar but
  • 34:48not a move, but sequential.
  • 34:49It's not allowing me to
  • 34:51touch to make it sequential.
  • 34:56Anyway, what you would have seen here,
  • 34:57but I could have made that work,
  • 34:59is that if we could restore the
  • 35:01synapses win 7B of the TB R1
  • 35:05heterozygote and homozygote.
  • 35:07And in the wild,
  • 35:08type adding when 7B didn't do
  • 35:09anything is the same synapse density.
  • 35:16OK how much time?
  • 35:17What time is it? So I have 1103.
  • 35:20We got fine time. OK yeah,
  • 35:22I should be coming pretty quick.
  • 35:25So then we use the TVI one layer 5:00,
  • 35:28so we could begin to ask what
  • 35:31happens to the pretrial cortex,
  • 35:32because as psychiatrists,
  • 35:34we know that the pretrial cortex.
  • 35:36Has to be important.
  • 35:38Pretty much.
  • 35:38That's what we
  • 35:41and wonderful work from
  • 35:43Patricia Goldman and Rakesh,
  • 35:44and we aren't That and others In Pasco.
  • 35:48I've shown that prefrontal cortex is
  • 35:50important and not now it's figuring out
  • 35:52how you get a lot of prefrontal cortex
  • 35:54and Cartec About Tabby Raman, in fact.
  • 35:56Beautiful work showing how the thalamus has
  • 35:59an important role written with signaling,
  • 36:01important prefrontal cortex
  • 36:03maturation and identity in any case.
  • 36:05So we wanted to do something in
  • 36:07pretrial CORTEX for all those reasons
  • 36:09and we use the layer 5 deletion to
  • 36:13do that and that paper was published
  • 36:16to that's the reference down below.
  • 36:22OK. And we wanted to see whether we
  • 36:26could make a difference in these mice
  • 36:29by restoring wind signaling to their
  • 36:32behavior and pretrial CORTEX function.
  • 36:35And so I learned from my next door neighbor,
  • 36:39Ben Cheyat, that lithium is
  • 36:43a agonist or wind signaling.
  • 36:48Because years ago Ben's teacher
  • 36:51and Randy Moon had shown during
  • 36:53development of Zenith this it lithium
  • 36:55functions of winds with agonist.
  • 36:59And lithium of course is
  • 37:01fairly safe drug for humans.
  • 37:04And then we also use a G SP3 beta inhibitor,
  • 37:07which will also activate when signaling
  • 37:10to see whether we could change the
  • 37:13synapse biology of these illumines,
  • 37:17Okay. So I'm just going to tell
  • 37:19you about the lithium experiment.
  • 37:21And so Civash gave one intraperitoneal
  • 37:25injection of lithium at post Natal 32
  • 37:31and then just one day later.
  • 37:34Harvest the brain as we've learned
  • 37:36from Ben that you could increase
  • 37:39synapses within 24 hours with lithium
  • 37:42in his synapse assays in vitro.
  • 37:44And then we did our handy dandy blue assay.
  • 37:47So this is just a control showing
  • 37:50you that normal Iran mutant,
  • 37:52Iran mutant has less mature
  • 37:54blue spines. So
  • 38:01this is the controls well as it's the control
  • 38:05without lithium control with lithium.
  • 38:07No big difference in the lithium didn't
  • 38:10do much to the wild type animals.
  • 38:12Here's the mutant that has
  • 38:15less blue density and then we
  • 38:17we increase the blue density.
  • 38:18If you compare this to this picture,
  • 38:23see if I modified the result
  • 38:26and showed that there was
  • 38:31rescue. The difference between
  • 38:32the wild type and the mutant
  • 38:33density was not significant.
  • 38:35Even the mutants didn't quite
  • 38:36get all the way up there.
  • 38:38So amazingly, this is magic to me
  • 38:42that lifting within one day would
  • 38:44make mature synapses out of those
  • 38:47mutant immature synapses one day,
  • 38:58and then the next thing we
  • 38:59wanted to find out was, was it.
  • 39:01Would this be true for an adult
  • 39:03or even grandpa mouse mutant,
  • 39:06for his whole life had decreased synapses?
  • 39:09Could we restore the synapses
  • 39:12in this situation? And so this,
  • 39:15that's what this paper is about. I'm
  • 39:21just showing a couple of there.
  • 39:23So we gave one dose of postnatal 830 and
  • 39:27then analyzed six months later one we did.
  • 39:36And so this is the control
  • 39:38of this grandpa mouse.
  • 39:41It still has lower synapse
  • 39:43density and windows. I don't know.
  • 39:47It's hard to believe,
  • 39:48so don't believe it,
  • 39:49but this is what we found.
  • 39:52How could this be possible?
  • 39:55I'll just say quickly that one way
  • 39:58to be possible is that those immature
  • 40:00synapses had a lot going for them.
  • 40:02They had almost everything they
  • 40:04needed to become mature synapses,
  • 40:06but they needed the kick.
  • 40:09And when signaling evidently was
  • 40:12enough to give me that kick,
  • 40:15another gene that we found,
  • 40:17rescue synapses in our in vitro assay,
  • 40:19is a kinesin,
  • 40:20which is a motor protein that moves
  • 40:23presynaptic vesicles in the position.
  • 40:25And so a simple hypothesis would
  • 40:28be that the lithium somehow allows
  • 40:31the synaptic vesicles to move and
  • 40:35dock in posing the post precinct.
  • 40:38Postnaptic membrane and fuse and
  • 40:41bring in the necessary components
  • 40:43for the for let's say NMDA receptors,
  • 40:47maybe after receptors to then
  • 40:49allow that synapse to form.
  • 40:51I don't know how this would
  • 40:52work for the average synapsis.
  • 40:58Then with excellent neurophysiologists
  • 41:01at UCSF, Andrew Nelson and Kevin Bender,
  • 41:05they looked at these old mice.
  • 41:07Indivo using slices and this is the control
  • 41:13showing that at this age they still have
  • 41:16less frequency of miniature and EPSC's.
  • 41:20Here's the here's the wild
  • 41:22type and here's the null.
  • 41:24I don't know that we showed that for the
  • 41:27heterozygote in this experiment and then
  • 41:31again with our single dose of lithium
  • 41:34post natalate 30 in this case testing.
  • 41:37Not as long,
  • 41:38but one to two months later you
  • 41:40got restoration of the EMSEPSCS.
  • 41:43They're both by neuroanatomy or his,
  • 41:47his Histology assays as well
  • 41:50as electrophysiology assays.
  • 41:51We have convergent evidence that T PL-1
  • 41:55mutants as adults have reduced synapses,
  • 41:58but those can be rescued
  • 42:01morphologically and physiologically
  • 42:02with a single dose of lithium.
  • 42:07So the summary of Part 2,
  • 42:09which is our synaptic phenotypes,
  • 42:11either one promotes excitatory
  • 42:12inhibitory synapses both on layer
  • 42:145 and layer six animal cells.
  • 42:16It does that in part by promoting
  • 42:20Keep Win 7B expression.
  • 42:23And these synapse, spine and synaptic
  • 42:26defects are rapidly and stably
  • 42:28corrected by a single dose of lithium,
  • 42:31which perdures for several months.
  • 42:35I didn't show you this,
  • 42:36but this is really fascinating.
  • 42:37They also have a very mild
  • 42:38cortic thalamic defect.
  • 42:39The axons broke to the thalamus but
  • 42:42don't enter the medial thalamus.
  • 42:44But giving lithium one day you
  • 42:46get a teeny amount of growth,
  • 42:48but you don't need much
  • 42:49get that extra growth.
  • 42:51We don't know whether that corrects
  • 42:52any Physiology in the thalamus.
  • 42:56Okay. Now just three minutes. Finish up.
  • 43:02Because so Hall is a graduate,
  • 43:04Mark Turner had looked at social
  • 43:07behavioral defects and associate
  • 43:11physiological measures in the
  • 43:13preparal cortex in the TV R1 mutants
  • 43:16and the effect of lithium on those.
  • 43:20So this is using a interaction acid
  • 43:24through index of socialization of mice.
  • 43:28Wild type and the tibro and mutants.
  • 43:29So the tibro and layer 5,
  • 43:31the guys had the preampron cortex
  • 43:33problem, have less socialization
  • 43:41and you give them lithium.
  • 43:43So we gave them lithium, waited four weeks,
  • 43:45did the social assay and we got some
  • 43:48improvement on their socialization.
  • 43:51I trust this because my lab
  • 43:52did not do the social assay.
  • 43:54We did. We gave the lithium,
  • 43:56we gave them the mice and then.
  • 43:58I hope they were blinded.
  • 43:59I can't remember they're better than blinded.
  • 44:01But let's just assume they are blinded.
  • 44:04Okay. Then they got fancier.
  • 44:06They put a one of these endomicroscopes
  • 44:09into the prefrontal cortex and measure
  • 44:12calcium imaging as a as an indication
  • 44:14of whether a given behavior was
  • 44:17activating cohorts of prefrontal cortex
  • 44:19neurons during a social behavior.
  • 44:22And they they this is their behavioral
  • 44:25testing either the social assay before.
  • 44:28The lithium and then after the lithium
  • 44:30they also did elevate plus maze which
  • 44:31I'm not going to tell you about.
  • 44:33And their social acid basically is
  • 44:36they introduce a mouse our mouse to
  • 44:40mouse one they rested for a while
  • 44:42introduced to an object just into another
  • 44:44mouse and then they reintroduced to
  • 44:46one of these familiar mice and they
  • 44:48measure the interaction time as their
  • 44:52index of socialization and while
  • 44:55while they're doing that they're.
  • 44:57They're measuring calcium imaging in
  • 45:00the prefrontal cortex. This is right.
  • 45:03I get fuzzy on this stuff.
  • 45:05They get these kinds of descriptions of,
  • 45:10well, this is the wild type
  • 45:12calcium imaging of cohorts of
  • 45:14neurons and prefrontal cortex,
  • 45:15and that's what the distribution of
  • 45:18amplitude and number of cells looks like.
  • 45:21And then that's what looks like
  • 45:23natiro mutant and the difference?
  • 45:25Between this shape and this shape
  • 45:26is statistically significant
  • 45:27with the P value of point O1.
  • 45:30So Tibo and mutants have problems interacting
  • 45:34with a new mouse or a familiar mouse.
  • 45:38This is just a in vivo calcium
  • 45:41imaging correlation of the social
  • 45:43thing that I showed you.
  • 45:45Then they did it after lithium and they
  • 45:48got indistinguishable P values for these.
  • 45:54Indices showing that we could rescue in
  • 45:58vivo Physiology with lithium as well.
  • 46:02So
  • 46:07that's the end of that data.
  • 46:09Summary stories tells you is social
  • 46:11deficits that are present in the
  • 46:13layer 5 units are rescued by lithium
  • 46:16and the in vivo activity of layer
  • 46:195 neurons in the medial prefrontal
  • 46:22cortex are also rescued by lithium.
  • 46:27So where, where does this take us?
  • 46:30Or maybe suggest that one can have
  • 46:34a therapy for at least humans who
  • 46:37are heterozygote or the tiger one,
  • 46:40no mutation with lithium or
  • 46:43other kinds of wind agonists.
  • 46:47And I think, you know,
  • 46:49that's the pipe dream.
  • 46:50And here's a little bit more of a pipe dream,
  • 46:51maybe other forms of cognitive
  • 46:54disorders of child and childhood.
  • 46:57Have at least as a component
  • 46:59of their phenotype this type of
  • 47:02problem with synapse formation
  • 47:04that might be amenable to treatment
  • 47:07with increasing wind signaling and
  • 47:11that's it. I I tried to mention I
  • 47:16think I mentioned everybody here
  • 47:18they are again and those are the
  • 47:19Blue Angels flying over the Golden
  • 47:21Gate Bridge recommend coming to.
  • 47:31So we'll manage questions both.