Frederick Sigworth, PhD
Research & Publications
Biography
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Research Summary
Ion channels act as molecular transducers, responding to chemical, mechanical, or electrical stimuli by opening a pore to allow ionic current to flow. Work in my laboratory seeks to clarify the transduction mechanisms of channel proteins. We use single-particle imaging in electron cryo-microscopy to obtain three-dimensional structures of channel proteins. To this end we are developing new computational and experimental methods for imaging membrane proteins in membranes. To study function we use patch-clamp recordings for the sensitive measurement of ion channel currents and collaborate with colleagues in Yale engineering departments to advance this technology as well.
Specialized Terms: Cell Physiology; Electron Microscopy; Electrophysiology; Ion Channel; Mathematical Model; Patch Clamp; Potassium Channel; Protein Structure; Sodium Channel; Voltage Gated Channel; Xenopus Oocyte
Extensive Research Description
My research work centers on the structure and function of ion channels, which are membrane proteins that selectively control the passage of ions across cell membranes. The activity of ion channels is central to very many physiological processes, including synaptic transmission and impulse propagation in the nervous system, the control of cardiac function and vascular resistance, salt and water transport in epithelia, and the control of hormone secretion.
Central to the understanding of ion channel function is the characterization of the stochastic 'gating' behavior of single channels. We are particularly interested in the 'voltage sensor' of voltage-gated potassium channels, and how it couples the transmembrane potential to channel gating. Towards an understanding of this protein structure, we are pursuing studies using electron cryo-microscopy (cryo-EM) of voltage-gated channel proteins. Electron microscopes have sufficient resolution to provide atomic-detail images, but radiation damage by the electron beam precludes structure determination from a single molecule. Instead, images from many individual protein molecules must be combined to yield even low-resolution structural information. Working with potassium channels reconstituted into lipid vesicles, we use novel specimen substrates and single-particle image processing methods to obtain the three-dimensional structure of these proteins in their various states.
The process of obtaining 3D protein structures from electron micrographs is a very interesting mathematical problem. We are pursuing new approaches to make this process more reliable and able to work on smaller protein particles (like ion channels) than those investigated in the past.
Coauthors
Research Interests
Biomedical Engineering; Electrophysiology; Ion Channels; Microscopy, Electron; Physiology; Xenopus; Potassium Channels; Sodium Channels; Patch-Clamp Techniques; Potassium Channels, Voltage-Gated; Voltage-Gated Sodium Channels
Selected Publications
- Statistical modeling and removal of lipid membrane projections for cryo-EM structure determination of reconstituted membrane proteinsJensen KH, Brandt SS, Shigematsu H, Sigworth FJ. Statistical modeling and removal of lipid membrane projections for cryo-EM structure determination of reconstituted membrane proteins Journal Of Structural Biology 2016, 194: 49-60. PMID: 26835990, PMCID: PMC4866491, DOI: 10.1016/j.jsb.2016.01.012.
- Quantifying the local resolution of cryo-EM density mapsKucukelbir A, Sigworth FJ, Tagare HD. Quantifying the local resolution of cryo-EM density maps Nature Methods 2013, 11: 63-65. PMID: 24213166, PMCID: PMC3903095, DOI: 10.1038/nmeth.2727.
- Single-Particle Cryo-EM Structure of a Membrane Protein in a MembraneWang L, Sigworth F. Single-Particle Cryo-EM Structure of a Membrane Protein in a Membrane Microscopy And Microanalysis 2010, 16: 1076-1077. DOI: 10.1017/s1431927610060514.
- A rail-to-rail operational amplifier in silicon-on-sapphire with constant transconductanceWeerakoon P, Sigworth F, Kindlmann P, Culurciello E. A rail-to-rail operational amplifier in silicon-on-sapphire with constant transconductance Analog Integrated Circuits And Signal Processing 2010, 65: 311-319. DOI: 10.1007/s10470-010-9484-6.
- A Two-Channel Patch-Clamp System on a ChipWeerakoon P, Culurciello E, Santos-Sacchi J, Yang Y, Sigworth F. A Two-Channel Patch-Clamp System on a Chip Biophysical Journal 2010, 98: 603a. DOI: 10.1016/j.bpj.2009.12.3288.
- Structure of the BK potassium channel in a lipid membrane from electron cryomicroscopy.Wang L, Sigworth FJ. Structure of the BK potassium channel in a lipid membrane from electron cryomicroscopy. Nature 2009, 461: 292-5. PMID: 19718020, PMCID: PMC2797367, DOI: 10.1038/nature08291.
- Integrated patch-clamp biosensor for high-density screening of cell conductanceWeerakoon P, Sigworth F, Culurciello E. Integrated patch-clamp biosensor for high-density screening of cell conductance Electronics Letters 2008, 44: 81. DOI: 10.1049/el:20083151.
- Ca-aktivierte K-Kanäle mittlerer Leitfähigkeit (IK): Klonierung und funktionelle Charakterisierung unterschiedlicher Isoformen in der apikalen und basolateralen Membran von KolonepithelzellenBarmeyer C, Rahner C, Yang Y, Sigworth F, Binder H, Rajendran V. Ca-aktivierte K-Kanäle mittlerer Leitfähigkeit (IK): Klonierung und funktionelle Charakterisierung unterschiedlicher Isoformen in der apikalen und basolateralen Membran von Kolonepithelzellen Zeitschrift Für Gastroenterologie 2007, 45 DOI: 10.1055/s-2007-988400.
- Using cryo-EM to measure the dipole potential of a lipid membrane.Wang L, Bose PS, Sigworth FJ. Using cryo-EM to measure the dipole potential of a lipid membrane. Proceedings Of The National Academy Of Sciences Of The United States Of America 2006, 103: 18528-33. PMID: 17116859, PMCID: PMC1693696, DOI: 10.1073/pnas.0608714103.
- Applying Hidden Markov Models to the Analysis of Single Ion Channel ActivityVenkataramanan L, Sigworth F. Applying Hidden Markov Models to the Analysis of Single Ion Channel Activity Biophysical Journal 2002, 82: 1930-1942. PMID: 11916851, PMCID: PMC1301989, DOI: 10.1016/s0006-3495(02)75542-2.
- Identification of hidden Markov models for ion channel currents .III. Bandlimited, sampled dataVenkataramanan L, Kuc R, Sigworth F. Identification of hidden Markov models for ion channel currents .III. Bandlimited, sampled data IEEE Transactions On Signal Processing 2000, 48: 376-385. DOI: 10.1109/78.823965.
- Two-Microelectrode Voltage Clamp of Xenopus Oocytes: Voltage Errors and Compensation for Local Current FlowBaumgartner W, Islas L, Sigworth F. Two-Microelectrode Voltage Clamp of Xenopus Oocytes: Voltage Errors and Compensation for Local Current Flow Biophysical Journal 1999, 77: 1980-1991. PMID: 10512818, PMCID: PMC1300479, DOI: 10.1016/s0006-3495(99)77039-6.
- Gramicidin channel controversy — the structure in a lipid environmentAndersen O, Apell H, Bamberg E, Busath D, Koeppe R, Sigworth F, Szabo G, Urry D, Woolley A. Gramicidin channel controversy — the structure in a lipid environment Nature Structural & Molecular Biology 1999, 6: 609-609. PMID: 10404209, DOI: 10.1038/10648.
- Identification of hidden Markov models for ion channel currents. I. Colored background noiseVenkataramanan L, Walsh J, Kuc R, Sigworth F. Identification of hidden Markov models for ion channel currents. I. Colored background noise IEEE Transactions On Signal Processing 1998, 46: 1901-1915. DOI: 10.1109/78.700963.
- Identification of hidden Markov models for ion channel currents. II. State-dependent excess noiseVenkataramanan L, Kuc R, Sigworth F. Identification of hidden Markov models for ion channel currents. II. State-dependent excess noise IEEE Transactions On Signal Processing 1998, 46: 1916-1929. DOI: 10.1109/78.700964.
- Activation of Shaker Potassium ChannelsSchoppa N, Sigworth F. Activation of Shaker Potassium Channels The Journal Of General Physiology 1998, 111: 295-311. PMID: 9450945, PMCID: PMC2222768, DOI: 10.1085/jgp.111.2.295.
- Activation of Shaker Potassium ChannelsSchoppa N, Sigworth F. Activation of Shaker Potassium Channels The Journal Of General Physiology 1998, 111: 313-342. PMID: 9450946, PMCID: PMC2222769, DOI: 10.1085/jgp.111.2.313.
- Activation of Shaker Potassium ChannelsSchoppa N, Sigworth F. Activation of Shaker Potassium Channels The Journal Of General Physiology 1998, 111: 271-294. PMID: 9450944, PMCID: PMC2222764, DOI: 10.1085/jgp.111.2.271.
- A Maximum-Likelihood Approach to Single-Particle Image RefinementSigworth F. A Maximum-Likelihood Approach to Single-Particle Image Refinement Journal Of Structural Biology 1998, 122: 328-339. PMID: 9774537, DOI: 10.1006/jsbi.1998.4014.
- Enhanced Closed-state Inactivation in a Mutant Shaker K+ ChannelAyer, Jr. R, Sigworth F. Enhanced Closed-state Inactivation in a Mutant Shaker K+ Channel The Journal Of Membrane Biology 1997, 157: 215-230. PMID: 9178609, DOI: 10.1007/s002329900230.
- Impaired slow inactivation in mutant sodium channelsCummins T, Sigworth F. Impaired slow inactivation in mutant sodium channels Biophysical Journal 1996, 71: 227-236. PMID: 8804606, PMCID: PMC1233474, DOI: 10.1016/s0006-3495(96)79219-6.
- Charge movement in the sodium channel.Sigworth F. Charge movement in the sodium channel. The Journal Of General Physiology 1995, 106: 1047-1051. PMID: 8786349, PMCID: PMC2229309, DOI: 10.1085/jgp.106.6.1047.
- Design of the EPC-9, a computer-controlled patch-clamp amplifier. 1. HardwareSigworth F. Design of the EPC-9, a computer-controlled patch-clamp amplifier. 1. Hardware Journal Of Neuroscience Methods 1995, 56: 195-202. PMID: 7538620, DOI: 10.1016/0165-0270(94)00128-4.
- Design of the EPC-9, a computer-controlled patch-clamp amplifier. 2. SoftwareSigworth F, Affolter H, Neher E. Design of the EPC-9, a computer-controlled patch-clamp amplifier. 2. Software Journal Of Neuroscience Methods 1995, 56: 203-215. PMID: 7538621, DOI: 10.1016/0165-0270(94)00129-5.
- Electronic Design of the Patch ClampSigworth F. Electronic Design of the Patch Clamp 1995, 95-127. DOI: 10.1007/978-1-4419-1229-9_4.
- Fitting and Statistical Analysis of Single-Channel RecordsColquhoun D, Sigworth F. Fitting and Statistical Analysis of Single-Channel Records 1995, 483-587. DOI: 10.1007/978-1-4419-1229-9_19.
- Oxygen deprivation activates an ATP-inhibitable K+ channel in substantia nigra neuronsJiang C, Sigworth F, Haddad G. Oxygen deprivation activates an ATP-inhibitable K+ channel in substantia nigra neurons Journal Of Neuroscience 1994, 14: 5590-5602. PMID: 8083755, PMCID: PMC6577106, DOI: 10.1523/jneurosci.14-09-05590.1994.
- Voltage gating of ion channelsSigworth F. Voltage gating of ion channels Quarterly Reviews Of Biophysics 1994, 27: 1-40. PMID: 7520590, DOI: 10.1017/s0033583500002894.
- Substitution of a hydrophobic residue alters the conformational stability of Shaker K+ channels during gating and assemblyMcCormack K, Lin L, Sigworth F. Substitution of a hydrophobic residue alters the conformational stability of Shaker K+ channels during gating and assembly Biophysical Journal 1993, 65: 1740-1748. PMID: 8274662, PMCID: PMC1225901, DOI: 10.1016/s0006-3495(93)81202-5.
- Functional expression and purification of a homomeric human alpha 1 glycine receptor in baculovirus-infected insect cells.Cascio M, Schoppa N, Grodzicki R, Sigworth F, Fox R. Functional expression and purification of a homomeric human alpha 1 glycine receptor in baculovirus-infected insect cells. Journal Of Biological Chemistry 1993, 268: 22135-22142. PMID: 8408073, DOI: 10.1016/s0021-9258(20)80658-9.
- Functional consequences of a Na+ channel mutation causing hyperkalemic periodic paralysisCummins T, Zhou J, Sigworth F, Ukomadu C, Stephan M, Ptáčk L, Agnew W. Functional consequences of a Na+ channel mutation causing hyperkalemic periodic paralysis Neuron 1993, 10: 667-678. PMID: 8386527, DOI: 10.1016/0896-6273(93)90168-q.
- Fluctuations in ion channel gating currents. Analysis of nonstationary shot noiseCrouzy S, Sigworth F. Fluctuations in ion channel gating currents. Analysis of nonstationary shot noise Biophysical Journal 1993, 64: 68-76. PMID: 8381683, PMCID: PMC1262303, DOI: 10.1016/s0006-3495(93)81341-9.
- Tandem linkage of Shaker K+ channel subunits does not ensure the stoichiometry of expressed channelsMcCormack K, Lin L, Iverson L, Tanouye M, Sigworth F. Tandem linkage of Shaker K+ channel subunits does not ensure the stoichiometry of expressed channels Biophysical Journal 1992, 63: 1406-1411. PMID: 1477286, PMCID: PMC1261445, DOI: 10.1016/s0006-3495(92)81703-4.
- [52] Analysis of nonstationary single-channel currentsSigworth F, Zhou J. [52] Analysis of nonstationary single-channel currents 1992, 207: 746-762. PMID: 1382211, DOI: 10.1016/0076-6879(92)07054-r.
- Open channel noise. VI. Analysis of amplitude histograms to determine rapid kinetic parametersHeinemann S, Sigworth F. Open channel noise. VI. Analysis of amplitude histograms to determine rapid kinetic parameters Biophysical Journal 1991, 60: 577-587. PMID: 1718467, PMCID: PMC1260101, DOI: 10.1016/s0006-3495(91)82087-2.
- Patch recordings from the electrocytes of Electrophorus electricus. Na currents and PNa/PK variability.Shenkel S, Sigworth F. Patch recordings from the electrocytes of Electrophorus electricus. Na currents and PNa/PK variability. The Journal Of General Physiology 1991, 97: 1013-1041. PMID: 1650809, PMCID: PMC2216506, DOI: 10.1085/jgp.97.5.1013.
- Changes in channel properties of acetylcholine receptors during the time course of thiol chemical modificationsBouzat C, Barrantes F, Sigworth F. Changes in channel properties of acetylcholine receptors during the time course of thiol chemical modifications Pflügers Archiv - European Journal Of Physiology 1991, 418: 51-61. PMID: 2041725, DOI: 10.1007/bf00370451.
- Yet another approach to the dwell-time omission problem of single-channel analysisCrouzy S, Sigworth F. Yet another approach to the dwell-time omission problem of single-channel analysis Biophysical Journal 1990, 58: 731-743. PMID: 1698473, PMCID: PMC1281014, DOI: 10.1016/s0006-3495(90)82416-4.
- Activation of Torpedo acetylcholine receptors expressed in mouse fibroblasts. Single channel current kinetics reveal distinct agonist binding affinities.Sine S, Claudio T, Sigworth F. Activation of Torpedo acetylcholine receptors expressed in mouse fibroblasts. Single channel current kinetics reveal distinct agonist binding affinities. The Journal Of General Physiology 1990, 96: 395-437. PMID: 1698917, PMCID: PMC2228994, DOI: 10.1085/jgp.96.2.395.
- Open channel noise. V. Fluctuating barriers to ion entry in gramicidin A channelsHeinemann S, Sigworth F. Open channel noise. V. Fluctuating barriers to ion entry in gramicidin A channels Biophysical Journal 1990, 57: 499-514. PMID: 1689592, PMCID: PMC1280744, DOI: 10.1016/s0006-3495(90)82566-2.
- Purified, modified eel sodium channels are active in planar bilayers in the absence of activating neurotoxins.Shenkel S, Cooper E, James W, Agnew W, Sigworth F. Purified, modified eel sodium channels are active in planar bilayers in the absence of activating neurotoxins. Proceedings Of The National Academy Of Sciences Of The United States Of America 1989, 86: 9592-9596. PMID: 2556720, PMCID: PMC298544, DOI: 10.1073/pnas.86.23.9592.
- Estimation of Na+ dwell time in the gramicidin A channel. Na+ ions as blockers of H+ currentsHeinemann S, Sigworth F. Estimation of Na+ dwell time in the gramicidin A channel. Na+ ions as blockers of H+ currents Biochimica Et Biophysica Acta 1989, 987: 8-14. PMID: 2480817, DOI: 10.1016/0005-2736(89)90448-3.
- Primary structure and functional expression of a mammalian skeletal muscle sodium channelTrimmer J, Cooperman S, Tomiko S, Zhou J, Crean S, Boyle M, Kalen R, Sheng Z, Barchi R, Sigworth F, Goodman R, Agnew W, Mandel G. Primary structure and functional expression of a mammalian skeletal muscle sodium channel Neuron 1989, 3: 33-49. PMID: 2559760, DOI: 10.1016/0896-6273(89)90113-x.
- Transmembrane Channels Based on Tartaric Acid-Gramicidin A HybridsStankovic C, Heinemann S, Delfino J, Sigworth F, Schreiber S. Transmembrane Channels Based on Tartaric Acid-Gramicidin A Hybrids Science 1989, 244: 813-817. PMID: 2471263, DOI: 10.1126/science.2471263.
- Open channel noise. IV. Estimation of rapid kinetics of formamide block in gramicidin A channelsHeinemann S, Sigworth F. Open channel noise. IV. Estimation of rapid kinetics of formamide block in gramicidin A channels Biophysical Journal 1988, 54: 757-764. PMID: 2465033, PMCID: PMC1330382, DOI: 10.1016/s0006-3495(88)83013-3.
- Chapter 6 Rapid Gating Events and Current Fluctuations in Gramicidin A ChannelSigworth F, Shenkel S. Chapter 6 Rapid Gating Events and Current Fluctuations in Gramicidin A Channel 1988, 33: 113-130. DOI: 10.1016/s0070-2161(08)60896-5.
- PrefaceAgnew W, Claudio T, Sigworth F. Preface 1988, 33: xiii-xvi. DOI: 10.1016/s0070-2161(08)60889-8.
- Chapter 11 Establishing a Stable Expression System for Studies of Acetylcholine ReceptorsClaudio T, Paulson H, Hartman D, Sine S, Sigworth F. Chapter 11 Establishing a Stable Expression System for Studies of Acetylcholine Receptors 1988, 33: 219-247. DOI: 10.1016/s0070-2161(08)60901-6.
- Genetic Reconstitution of Functional Acetylcholine Receptor Channels in Mouse FibroblastsClaudio T, Green W, Hartman D, Hayden D, Paulson H, Sigworth F, Sine S, Swedlund A. Genetic Reconstitution of Functional Acetylcholine Receptor Channels in Mouse Fibroblasts Science 1987, 238: 1688-1694. PMID: 3686008, DOI: 10.1126/science.3686008.
- Open channel noise. III. High-resolution recordings show rapid current fluctuations in gramicidin A and four chemical analoguesSigworth F, Urry D, Prasad K. Open channel noise. III. High-resolution recordings show rapid current fluctuations in gramicidin A and four chemical analogues Biophysical Journal 1987, 52: 1055-1064. PMID: 2447969, PMCID: PMC1330105, DOI: 10.1016/s0006-3495(87)83299-x.
- Data transformations for improved display and fitting of single-channel dwell time histogramsSigworth F, Sine S. Data transformations for improved display and fitting of single-channel dwell time histograms Biophysical Journal 1987, 52: 1047-1054. PMID: 2447968, PMCID: PMC1330104, DOI: 10.1016/s0006-3495(87)83298-8.
- Open channel noise. II. A test for coupling between current fluctuations and conformational transitions in the acetylcholine receptorSigworth F. Open channel noise. II. A test for coupling between current fluctuations and conformational transitions in the acetylcholine receptor Biophysical Journal 1986, 49: 1041-1046. PMID: 2423148, PMCID: PMC1329684, DOI: 10.1016/s0006-3495(86)83732-8.
- The electrophysiology of the secretory cell (The secretory process, vol. 2) edited by A. M. Poisner and J. M. Trifaro, Elsevier, 1985. $83.25/Dfl 225 (xviii + 312 pages) ISBN 0 444 80599 0Sigworth F, Hunter M. The electrophysiology of the secretory cell (The secretory process, vol. 2) edited by A. M. Poisner and J. M. Trifaro, Elsevier, 1985. $83.25/Dfl 225 (xviii + 312 pages) ISBN 0 444 80599 0 Trends In Biochemical Sciences 1986, 11: 231. DOI: 10.1016/0968-0004(86)90014-9.
- Fitting and Statistical Analysis of Single-Channel RecordsColquhoun D, Sigworth F. Fitting and Statistical Analysis of Single-Channel Records 1983, 191-263. DOI: 10.1007/978-1-4615-7858-1_11.
- Electronic Design of the Patch ClampSigworth F. Electronic Design of the Patch Clamp 1983, 3-35. DOI: 10.1007/978-1-4615-7858-1_1.
- An Example of AnalysisSigworth F. An Example of Analysis 1983, 301-321. DOI: 10.1007/978-1-4615-7858-1_14.
- Improved patch-clamp techniques for high-resolution current recording from cells and cell-free membrane patchesHamill O, Marty A, Neher E, Sakmann B, Sigworth F. Improved patch-clamp techniques for high-resolution current recording from cells and cell-free membrane patches Pflügers Archiv - European Journal Of Physiology 1981, 391: 85-100. PMID: 6270629, DOI: 10.1007/bf00656997.
- The variance of sodium current fluctuations at the node of RanvierSigworth F. The variance of sodium current fluctuations at the node of Ranvier The Journal Of Physiology 1980, 307: 97-129. PMID: 6259340, PMCID: PMC1283036, DOI: 10.1113/jphysiol.1980.sp013426.
- Single Na+ channel currents observed in cultured rat muscle cellsSigworth F, Neher E. Single Na+ channel currents observed in cultured rat muscle cells Nature 1980, 287: 447-449. PMID: 6253802, DOI: 10.1038/287447a0.
- Chemical modification reduces the conductance of sodium channels in nerveSigworth F, Spalding B. Chemical modification reduces the conductance of sodium channels in nerve Nature 1980, 283: 293-295. PMID: 6965422, DOI: 10.1038/283293a0.
- Sodium channels in nerve apparently have two conductance statesSIGWORTH F. Sodium channels in nerve apparently have two conductance states Nature 1977, 270: 265-267. PMID: 593345, DOI: 10.1038/270265a0.