Dhananjay Bhaskar, PhD
Postdoctoral Associate
Research & Publications
Biography
News
Coauthors
Selected Publications
- Multiscale geometric and topological analyses for characterizing and predicting immune responses from single cell dataVenkat A, Bhaskar D, Krishnaswamy S. Multiscale geometric and topological analyses for characterizing and predicting immune responses from single cell data. Trends In Immunology 2023, 44: 551-563. PMID: 37301677, DOI: 10.1016/j.it.2023.05.003.
- Cell cycle controls long-range calcium signaling in the regenerating epidermisMoore J, Bhaskar D, Gao F, Matte-Martone C, Du S, Lathrop E, Ganesan S, Shao L, Norris R, Sanz N, Annusver K, Kasper M, Cox A, Hendry C, Rieck B, Krishnaswamy S, Greco V. Cell cycle controls long-range calcium signaling in the regenerating epidermis. Journal Of Cell Biology 2023, 222: e202302095. PMID: 37102999, PMCID: PMC10140546, DOI: 10.1083/jcb.202302095.
- Current trends in artificial intelligence in reproductive endocrinologyBhaskar D, Chang TA, Wang S. Current trends in artificial intelligence in reproductive endocrinology. Current Opinion In Obstetrics & Gynecology 2022, 34: 159-163. PMID: 35895955, DOI: 10.1097/gco.0000000000000796.
- Topological data analysis of collective and individual epithelial cells using persistent homology of loopsBhaskar D, Zhang W, Wong I. Topological data analysis of collective and individual epithelial cells using persistent homology of loops. Soft Matter 2021, 17: 4653-4664. PMID: 33949592, PMCID: PMC8276269, DOI: 10.1039/d1sm00072a.
- Analyzing collective motion with machine learning and topologyBhaskar D, Manhart A, Milzman J, Nardini JT, Storey KM, Topaz CM, Ziegelmeier L. Analyzing collective motion with machine learning and topology. Chaos An Interdisciplinary Journal Of Nonlinear Science 2019, 29: 123125. PMID: 31893635, PMCID: PMC7027427, DOI: 10.1063/1.5125493.
- Molecular Graph Generation via Geometric ScatteringBhaskar D, Grady J, Castro E, Perlmutter M, Krishnaswamy S. Molecular Graph Generation via Geometric Scattering. 2022, 00: 1-6. DOI: 10.1109/mlsp55214.2022.9943379.
- Motility-limited aggregation of mammary epithelial cells into fractal-like clustersLeggett SE, Neronha ZJ, Bhaskar D, Sim JY, Perdikari TM, Wong IY. Motility-limited aggregation of mammary epithelial cells into fractal-like clusters. Proceedings Of The National Academy Of Sciences Of The United States Of America 2019, 116: 17298-17306. PMID: 31413194, PMCID: PMC6717304, DOI: 10.1073/pnas.1905958116.
- Coupling mechanical tension and GTPase signaling to generate cell and tissue dynamicsZmurchok C, Bhaskar D, Edelstein-Keshet L. Coupling mechanical tension and GTPase signaling to generate cell and tissue dynamics. Physical Biology 2018, 15: 046004. PMID: 29473547, DOI: 10.1088/1478-3975/aab1c0.
- Swarming Migration of Co-attracting Mesenchymal Cells into Fractal-Like Epithelial ClustersLeggett S, Neronha Z, Bhaskar D, Perdikari T, Wong I. Swarming Migration of Co-attracting Mesenchymal Cells into Fractal-Like Epithelial Clusters. Biophysical Journal 2018, 114: 513a-514a. DOI: 10.1016/j.bpj.2017.11.2806.
- Polarization and migration in the zebrafish posterior lateral line systemKnutsdottir H, Zmurchok C, Bhaskar D, Palsson E, Nogare D, Chitnis A, Edelstein-Keshet L. Polarization and migration in the zebrafish posterior lateral line system. PLOS Computational Biology 2017, 13: e1005451. PMID: 28369079, PMCID: PMC5393887, DOI: 10.1371/journal.pcbi.1005451.
- The need for speed: Migratory cells in tight spaces boost their molecular clockBhaskar D, Hruska AM, Wong IY. The need for speed: Migratory cells in tight spaces boost their molecular clock. Cell Systems 2022, 13: 509-511. PMID: 35863324, PMCID: PMC10071288, DOI: 10.1016/j.cels.2022.06.002.
- Breast Cancer Cells Transition from Mesenchymal to Amoeboid Migration in Tunable Three-Dimensional Silk–Collagen HydrogelsKhoo AS, Valentin TM, Leggett SE, Bhaskar D, Bye EM, Benmelech S, Ip BC, Wong IY. Breast Cancer Cells Transition from Mesenchymal to Amoeboid Migration in Tunable Three-Dimensional Silk–Collagen Hydrogels. ACS Biomaterials Science & Engineering 2019, 5: 4341-4354. PMID: 31517039, PMCID: PMC6739834, DOI: 10.1021/acsbiomaterials.9b00519.
- 3D printed self-adhesive PEGDA–PAA hydrogels as modular components for soft actuators and microfluidicsValentin T, DuBois E, Machnicki C, Bhaskar D, Cui F, Wong I. 3D printed self-adhesive PEGDA–PAA hydrogels as modular components for soft actuators and microfluidics. Polymer Chemistry 2019, 10: 2015-2028. DOI: 10.1039/c9py00211a.
- Topological data analysis of spatial patterning in heterogeneous cell populations: clustering and sorting with varying cell-cell adhesionBhaskar D, Zhang W, Volkening A, Sandstede B, Wong I. Topological data analysis of spatial patterning in heterogeneous cell populations: clustering and sorting with varying cell-cell adhesion. Npj Systems Biology And Applications 2023, 9: 43. PMID: 37709793, PMCID: PMC10502054, DOI: 10.1038/s41540-023-00302-8.
- A Flow Artist for High-Dimensional Cellular DataMacDonald K, Bhaskar D, Thampakkul G, Nguyen N, Zhang J, Perlmutter M, Adelstein I, Krishnaswamy S. A Flow Artist for High-Dimensional Cellular Data. 2023, 00: 1-6. DOI: 10.1109/mlsp55844.2023.10285942.
- Transformer-based protein generation with regularized latent space optimizationCastro E, Godavarthi A, Rubinfien J, Givechian K, Bhaskar D, Krishnaswamy S. Transformer-based protein generation with regularized latent space optimization. Nature Machine Intelligence 2022, 4: 840-851. DOI: 10.1038/s42256-022-00532-1.
- TOWARDS AUTOMATED SELECTION OF EMBRYOS FOR IVF BY THE INVESTIGATION OF CHANGES IN RELATIVE ENTROPY OVER TIMEWang S, Bhaskar D, Zou S, Sakkas D. TOWARDS AUTOMATED SELECTION OF EMBRYOS FOR IVF BY THE INVESTIGATION OF CHANGES IN RELATIVE ENTROPY OVER TIME. Fertility And Sterility 2020, 114: e169-e170. DOI: 10.1016/j.fertnstert.2020.08.483.