Bioinformatics workshop series

Register: https://schedule.yale.edu/event/11974678

Presenter: Dr. Francesc Lopez-Giraldez, Yale Center for Genomic Analysis

Summary: In this hands-on workshop, participants will learn how to use the YCGA bulk RNA-seq pipeline to produce count data from fastq files. Since YCGA pipelines have similar user interfaces the knowledge learned can be applied to other pipelines and tools that YCGA offers. We will review some of them.

You will learn how to:

• Use some of the NGS tools offered by the YCGA Bioinformatics Group
• Run the Bulk-RNAseq YCGA pipeline

Requirements:

• Have participated in session 3 and or being familiar with bash/CLI or Jupyter Notebooks
• Bring a laptop.
• HPC account to access Yale Open OnDemand, if you don't have an account bring your laptop with R and RStudio installed.

This session is suitable for both beginner, intermediate and Advanced users.