Bioinformatics workshop series

Register: https://schedule.yale.edu/event/11967121

Presenter: Dr. Francesc Lopez-Giraldez, Yale Center for Genomic Analysis

Summary: Learn the detailed process of transforming raw RNAseq data (fastq format) into meaningful raw counts, without relying on automated pipelines. This hands-on workshop emphasizes the step-by-step methodology for data processing and analysis. For this hands-on workshop, participants will be using Open OnDemand and Jupyter Notebooks.

You will learn how to:

• QC, filter, and trim NGS sequences
• Align sequences to a reference genome
• Produce a count matrix ready to be used with DESeq2

Requirements:

• Have participated to session 3 or being familiar with bash/CLI or Jupyter Notebook
• Bring a laptop
• HPC account to access Yale Open OnDemand, if you don't have an account bring your laptop with R and RStudio installed.

This session is suitable for both beginner and intermediate users.