Child Study Center Grand Rounds 01.11.2022
March 21, 2022The Long Arm of Early Life: Comparative Evidence and Insight from Nonhuman Primates
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- 00:00Great, so there's still people coming in,
- 00:04but we might just make a start and so
- 00:07good afternoon everyone and welcome to
- 00:09grand rounds at the Child Study Center
- 00:12and I'd like to start by thanking
- 00:15Doctor Linda Mays for kicking off
- 00:17our 2022 lecture series last week.
- 00:21And you know, one of the themes that
- 00:22emerged from Linda's presentation
- 00:23was the importance of community,
- 00:25so it's so heartening to see you
- 00:27all on the call today as we continue
- 00:29with our grand rounds series.
- 00:31Now just a couple of notices,
- 00:33and next week we'll hear from Usha
- 00:35Tummala Narra and from Boston
- 00:37College after Russia to molinara,
- 00:39they'll be speaking to us about a
- 00:42psycho analytical perspective on
- 00:43the origins of xenophobia and racism
- 00:45and how such xenophobia and racism
- 00:47contributes in perpetuates suffering and
- 00:50trauma within racial minority immigrants.
- 00:52Here in the United States and now
- 00:54rounding off our speaker series in
- 00:56January will be Doctor Jonathan
- 00:58Omer Hearty from Kings College.
- 01:00London will be sharing some new data.
- 01:02From the developing Human Connectome project,
- 01:04and really emphasizing the importance
- 01:07of studying individual trajectories of
- 01:10brain development from the prenatal
- 01:12period across early life to better
- 01:14understand braydan behavior associations.
- 01:17Now today it's my distinct privilege
- 01:19and pleasure to introduce Doctor
- 01:22Jenny Tongue from Duke University.
- 01:24I'd like to especially thank
- 01:26Jenny for being so flexible.
- 01:27We really reschedule this to be a virtual
- 01:30format and with very short notice.
- 01:33So thank you,
- 01:34Jennifer,
- 01:34for being with us today and as you'll hear
- 01:38from Doctor Tongues presentation today,
- 01:40the Tongue Group seamlessly integrates
- 01:42functional genomics with behavioral
- 01:44ecology to really ask and answer
- 01:47questions of importance regarding
- 01:48how the social environment and
- 01:50social stress shapes individual
- 01:52differences in a range of phenotypes,
- 01:54and then how those changes in
- 01:56behavior can change the function
- 01:58and the evolution of the genome.
- 02:00Now,
- 02:01Doctor Tung's work has been
- 02:02the impact of doctor Tongue.
- 02:04Work has been recognized by a number
- 02:06of different funding institutions,
- 02:08agencies, and foundations,
- 02:09including the MacArthur Foundation,
- 02:11that named Jenny MacArthur Fellow in
- 02:132019 and which I think was the same
- 02:15year that you renamed as a fellow in
- 02:17the Canadian Institute for Advanced
- 02:19Research Child and Brain Development Program.
- 02:22Now it's at this stage that I really
- 02:23wish that I had some canned laugh or
- 02:25some canned applause to like welcome
- 02:27you to the Child Study Center.
- 02:28We're getting some virtual applause
- 02:30in on zoom,
- 02:32but really,
- 02:32it's a pleasure to have you with.
- 02:34Today and welcome to the CHILD Study Center.
- 02:40Thank you so much Karen.
- 02:41Thanks to all of you for for being
- 02:43willing to carve out time in your
- 02:44day to do another virtual seminar,
- 02:46and especially to Karen and Rosemary
- 02:48for being so flexible and making
- 02:51this thing work as we go through
- 02:53the sort of whiplash of wave for
- 02:56whatever we happen to be on.
- 02:59OK, can you guys see my screen?
- 03:01OK, does this look like
- 03:03it's it's supposed to look?
- 03:04This is great alright.
- 03:06As Karen mentioned,
- 03:07my focal system is largely non
- 03:10human primates.
- 03:11I do some work on other social
- 03:13mammals but by and large not
- 03:15humans which I suspect is the the
- 03:17study system of most of you here.
- 03:19So I'm going to just start my
- 03:22presentation by introducing you
- 03:24to a few of our study subjects.
- 03:27The animals in my title slide are.
- 03:30Two known females.
- 03:31This is Rwanda on the bottom
- 03:33right and her then adolescent
- 03:35daughter rodeo up on the top.
- 03:38I'm showing you these particular
- 03:39individuals because they are the benefits
- 03:42of substantial amounts of privilege.
- 03:44At least what counts is privilege
- 03:46in a wild baboon society,
- 03:48Rwanda was born to a particularly
- 03:50high status female and because
- 03:52in species like these,
- 03:53females inherit their social status,
- 03:55their position on the on the social
- 03:58hierarchy from their mothers, she's.
- 04:01Tire life.
- 04:03As either the top ranking female and
- 04:05her social group or just right below
- 04:08that that's had some pretty profound
- 04:10effects on on her life history.
- 04:13High ranking females in the population
- 04:16that we study reach maturation
- 04:19earlier and because of increased
- 04:21or better access to resources,
- 04:25they tend to have shorter
- 04:26inter birth intervals as well.
- 04:28So Rwanda has been remarkably
- 04:30successful at producing offspring.
- 04:32She's had eight.
- 04:33Live birth so far 2 miscarriages and her
- 04:36most recent offspring was born in 2020,
- 04:39so she was a pandemic baby and Rwanda
- 04:43is still going the the advantages
- 04:46that accrue to her have been passed
- 04:49down in an intergenerational
- 04:50fashion to her daughter Rodeo here,
- 04:53who benefits from having a large
- 04:55family including a large number of
- 04:57sisters who are likely to be her
- 04:59closest social partners throughout life.
- 05:01And in fact we know from previous
- 05:02work in our study.
- 05:03Population that females who have a
- 05:05lot of close social partners live
- 05:07on average years longer than those
- 05:09who do not see the top quartile
- 05:12versus the bottom quartile.
- 05:13Most socially integrated versus
- 05:15socially isolated baboons.
- 05:17So the circumstances of early life
- 05:20surrounding the birth of these
- 05:22animals shapes their phenotype
- 05:24in a long lasting fashion,
- 05:27parallel in some ways to what
- 05:29has been observed in humans.
- 05:32This type of the importance of early
- 05:35life effects I'm talking about here
- 05:37is something that's been observed
- 05:39repeatedly in other species,
- 05:40and in fact,
- 05:42in much more striking fashions that
- 05:44I'm even talking about in the baboons.
- 05:46So here in the top,
- 05:47I'm showing you spadefoot,
- 05:50toad tadpoles, water fleas,
- 05:52and tobacco horn worm larvae,
- 05:55which actually produced
- 05:57entirely different morphs,
- 05:59carnivore versus omnivore, or morphs.
- 06:02Of the tadpoles, can you see my cursor?
- 06:05Actually, I can't tell if you can see what.
- 06:07Yeah, OK. Great, so carnivore and
- 06:10omnivore or more fear is actually
- 06:12a carnivore eating an omnivore
- 06:14morph based purely on what early
- 06:16life diet looks like in these.
- 06:17In these in these toads,
- 06:20this elaborated helmet or long sword
- 06:24depending on whether eggs of Daphnia
- 06:27are exposed to predator cues or a
- 06:29completely different color morph,
- 06:31just depending on the temperature.
- 06:33In early development these
- 06:35are pretty far afield from us,
- 06:37but there are examples of fairly striking.
- 06:40Early life effects in other mammals as well.
- 06:43We know from experimental evidence
- 06:45that wild red squirrels who are exposed
- 06:48to cues of high density actually
- 06:50accelerate the their offspring growth.
- 06:52We know that voles who are born
- 06:54in the cold season versus a wet
- 06:56season develop a thicker codes and
- 06:58from work in the population that
- 07:00I'll be telling you about today.
- 07:02These baboons we know that diet in
- 07:04the first year of life postnatally
- 07:07has effects on the overall lifetime
- 07:09reproductive success of these.
- 07:10Animals, even years or decades later.
- 07:14And of course,
- 07:15in our own species there's been
- 07:17abundant work linking childhood
- 07:18adversity in advantage,
- 07:20including in the adverse childhood
- 07:22experiences framework to later
- 07:24life health and mortality rates.
- 07:27So we know that these things exist.
- 07:31We know they're common across species,
- 07:32but there are a number of
- 07:34lingering questions about why,
- 07:36how and when these types
- 07:38of relationships arise,
- 07:40including whether childhood adversity or
- 07:42early life adversity leads to differences.
- 07:45In natural lifespan,
- 07:46in completely natural primate populations
- 07:49in the way that has been observed
- 07:52in humans to get at these questions,
- 07:54I've been lucky enough to Co direct
- 07:56the Amboseli Baboon Research Project,
- 07:59which is a launch toodle field study
- 08:01of wild primates in southern Kenya.
- 08:03That's now been running continuously
- 08:04for over 50 years,
- 08:06so this is actually the first talk
- 08:07where I get to say over 50 years
- 08:09and what we mean by that is that
- 08:11individually recognized animals
- 08:12in this population so recognized
- 08:13on site by trained observers.
- 08:15Have been watched on a near
- 08:17daily basis for those 50 years.
- 08:19Of course,
- 08:20that that constitutes multiple
- 08:21generations of baboons.
- 08:22We collect data on their social
- 08:25interactions on their reproductive history.
- 08:28On life span and we also complement
- 08:30those data with information on
- 08:32their endocrine profiles on their
- 08:35genetic relatedness to one another
- 08:37on their microbiome and on their
- 08:40gene regulation more recently.
- 08:42Like I said,
- 08:42this has been a 50 year plus project,
- 08:45so I've had the the ability to work
- 08:48on this really singular resource
- 08:51through the foresight of Jean Altman,
- 08:53who founded the project in 1971
- 08:55with her husband, Stuart Altman.
- 08:57Susan Alberts,
- 08:58who's also at Duke and Beth Archie
- 09:00at the University of Notre Dame.
- 09:02And together we Co. Direct this project.
- 09:05A large number of our employees
- 09:07on the project our Kenyan and are
- 09:09based in Kenya at the field site
- 09:12or in Nairobi and so all of the
- 09:14data that I'll be talking to
- 09:17you about today were collected.
- 09:19In partnership with them and they are
- 09:22a really extraordinary professional
- 09:24and talented group of people.
- 09:26So I want to acknowledge them and here too.
- 09:29OK, so I told you we've been
- 09:31watching these animals for 50
- 09:33some years in the background.
- 09:34Here is the pedigree for those animals.
- 09:37Both maternal lines and yellow
- 09:38and paternal lines in blue.
- 09:40We're now up to just over 2100
- 09:43known individuals in the population,
- 09:46and the ones who we followed the
- 09:48longest are from families that we
- 09:50have up to 9 generations of data for.
- 09:52So using this information which
- 09:54goes across the full life course
- 09:56and intergenerationally.
- 09:57We are interested in understanding
- 09:59the consequences of early life
- 10:01experience and early life adversity
- 10:03for natural mortality in this
- 10:05sort of prospectively intensively
- 10:07monitored setting that is free
- 10:09from the types of potentially
- 10:11confounding or potentially mediating.
- 10:13Depending on your question,
- 10:15factors that influence early
- 10:17life effects in humans.
- 10:18We're interested, of course,
- 10:20as as as scientists trained from an
- 10:23evolutionary biology, tradition,
- 10:24and understanding why these
- 10:26effects exist in the first place.
- 10:29Is there a reason for animals to
- 10:31adjust their phenotypes in a way that,
- 10:33for example,
- 10:34predicts how they'll deal with later life,
- 10:37environmental adversity,
- 10:38and as many of you may be?
- 10:42We are interested in how these types
- 10:44of early life effects may arise.
- 10:46What links and experience that may
- 10:49occur decades prior to the phenotypes
- 10:52that we observe with the internal
- 10:55physiological states that those organisms?
- 10:58So there is quite a bit of
- 11:00literature in our population as
- 11:02well as in nonhuman primates.
- 11:04Generally, including from your colleague,
- 11:06Amanda Detmer,
- 11:07who I think I saw here.
- 11:09Hi Amanda,
- 11:09on different sources of early life
- 11:12experience and downstream effects
- 11:13in the juvenile or adult period,
- 11:16for example, in Amboseli alone,
- 11:18we know that early life social status
- 11:20has long term predictive relationships
- 11:22with the timing of maturation with
- 11:25glucocorticoid Physiology and
- 11:26with the ability of animals too.
- 11:28Resist drought later in life.
- 11:30We know that mothers are exceptionally
- 11:32important for baboons because like humans,
- 11:35baboon babies experience long
- 11:37periods of nutritional and social
- 11:40dependency and and and individuals
- 11:42who lose their mothers early in
- 11:44life are very unlikely to survive
- 11:47themselves to adulthood.
- 11:48Similarly,
- 11:48animals who have relatively socially
- 11:51isolated mothers are less likely to
- 11:54make it to their own reproductive maturation.
- 11:57Resource competition influences
- 11:58many of these outcomes as well,
- 12:00including maturation timing and
- 12:02certain patterns of gene regulation
- 12:04and early life drought.
- 12:05This is a highly variable environment,
- 12:07has strong effects on female fertility
- 12:10and later life resilience to drought.
- 12:13So all of these papers pursued
- 12:15individual sources of early life
- 12:18experience and in connection
- 12:20with individual outcome variables
- 12:23we became very inspired.
- 12:24Actually by work done in humans in the
- 12:27Asus framework to ask what happens
- 12:29if you look at them in conjunction.
- 12:32In fact,
- 12:32if you do something as simple as counting
- 12:35up the number of sources of advantage
- 12:38or adversity that baboon baboons
- 12:40can experience early in life,
- 12:42so we considered. Six of them,
- 12:44in a baboon parallel of an ACE score,
- 12:47early life social status.
- 12:49So the the dominance rank the
- 12:51position on a linear social hierarchy
- 12:53of the mother of a baby baboon.
- 12:56Whether or not that baby reached
- 13:00reproductive maturation.
- 13:00So men are key for females.
- 13:02Testicular enlargement for
- 13:04males without losing its mother.
- 13:08How isolated or integrated that
- 13:10mother was based on the results I
- 13:13showed you earlier that that type of
- 13:15pattern predicts juvenile survival,
- 13:18whether maternal resources were
- 13:19diverted by a competing younger sibling.
- 13:22So inter birth intervals in
- 13:25our population get very short,
- 13:26the lowest quartile is about a year
- 13:28and a half in her birth interval.
- 13:30So we asked whether individuals were
- 13:32faced with a little brother or sister
- 13:35within that very short period of time.
- 13:38We asked about resource competition.
- 13:41This experience density so
- 13:42the size of social groups.
- 13:44Who of animals?
- 13:45Who are a given focal animals
- 13:47immediate competitor?
- 13:48And we asked about exposure to environmental
- 13:51adversity in the form of drought.
- 13:53This is a very dry environment as
- 13:54I'll show you a little bit later,
- 13:56but some years are much wetter than others,
- 14:01so our interest here was not
- 14:03what happened immediately.
- 14:04It's perhaps unsurprising if an
- 14:06animal loses its mother when it's
- 14:08so nutritionally dependent that
- 14:10it doesn't do very well,
- 14:12but rather in what happens
- 14:13over a longer stretch of time,
- 14:15separated from early life.
- 14:16So here we're specifically asking me about.
- 14:19Events that happen early in life
- 14:21exposures that occur early in
- 14:23life and their predictive value
- 14:25for survival in adulthood.
- 14:27So starting around age 4 for these animals.
- 14:31Unlike what is typical in aces and humans,
- 14:35these six sources of adversity
- 14:37are actually not very closely
- 14:39correlated with each other.
- 14:40In other words,
- 14:41it's not the case that if an animal
- 14:43is born to a low status mother,
- 14:45she is more likely to be born
- 14:47to a socially socially isolated
- 14:49mother or experience higher degrees
- 14:51of resource competition.
- 14:53So we're able to parse those different
- 14:55types of experiences separately from another.
- 14:57A little bit more cleanly than is
- 14:59typical in human studies, and.
- 15:01In the same vein,
- 15:02early life environment is not very
- 15:05correlated with environment that
- 15:07experience that animals experience
- 15:09in adulthood.
- 15:10So here's the breakdown about 1/5
- 15:12to 1/4 of this is actually females
- 15:14in this case of females in our
- 15:17study population are what we think
- 15:19of as our silver spoon babies who
- 15:22experience no particular sources
- 15:24of major adversity early in life.
- 15:26Another third of them experienced
- 15:28one of these six,
- 15:29and then the more unfortunate ones are.
- 15:31Faced with two or even three or more
- 15:34sources of major early adversity.
- 15:37So I'll cut right to the chase again here.
- 15:39The ages on the X axis represent
- 15:42adulthood in baboons,
- 15:43and here I'm showing you survival
- 15:45curves stratified by that baboon.
- 15:47Aces score from zero to three or more.
- 15:51This is the kind of result where we
- 15:54actually did not expect something so clean,
- 15:57and when I show it to you,
- 15:58it's you know you almost don't
- 16:00need statistics to see it,
- 16:01but I'll tell you that what we're showing
- 16:04you is a difference in median survival.
- 16:07Highly significant difference in
- 16:09median survival depending on the
- 16:11number of adverse experiences,
- 16:13a baby baboon faced that leads to
- 16:16a difference in lifespan between
- 16:17about 18 or 19 years.
- 16:19Assuming that an animal gets to
- 16:22reproductive maturation to about 9
- 16:24years for those animals who experience
- 16:26three or more sources of adversity,
- 16:28it's sometimes useful to put these in,
- 16:30you know, coarsely translated terms,
- 16:33so this is a decade in real time.
- 16:36The lifespan.
- 16:37And the sort of life history of pace
- 16:40of life of baboons is about 2 1/2
- 16:43to three times faster than humans.
- 16:46So what I'm showing you here is a decade.
- 16:48If we put that in human terms,
- 16:49we're talking about differences of
- 16:5120 to 30 years in a population where
- 16:54everyone has equivalent access to healthcare.
- 16:57Because there is no health care.
- 16:59There is no smoking.
- 17:01There is no alcoholism.
- 17:03There are no illicit drugs.
- 17:04There are no motorcycles, etc etc.
- 17:07And yet there's this very pronounced.
- 17:09Long lasting effect on adult mortality rates.
- 17:13OK, perhaps interestingly,
- 17:14for any of you who use the Asus framework,
- 17:19which is proposed in some cases to move
- 17:22through an intermediary of effects on social,
- 17:25emotional and cognitive development,
- 17:26what we find is that individuals
- 17:28are silver spoon.
- 17:29Babies end up growing up to be socially
- 17:31more integrated and socially better
- 17:33connected than are individuals who
- 17:35experienced a lot of early life adversity,
- 17:38which is perhaps one of the mediating
- 17:40factors that may explain this relationship.
- 17:43Although separate analysis suggest
- 17:45it certainly can't explain at all.
- 17:48And for any of you who may be
- 17:50interested in the evolutionary
- 17:51ramifications of this result,
- 17:53what we find is that this shortened
- 17:56lifespan not only influences a
- 17:59female's own time on time on earth,
- 18:02but also the likelihood that
- 18:04she'll leave many copies of her
- 18:06own genome in future generations,
- 18:08and Amboseli females produce another
- 18:11surviving offspring you know,
- 18:13not quite like clockwork,
- 18:14but pretty close to it about every 2.1 years.
- 18:17So a difference in lifespan of 10 years
- 18:21is a dramatic difference in terms of an
- 18:25individual's lifetime reproductive success.
- 18:28So a former graduate student working
- 18:31with the project specifically,
- 18:33and Susan Alberts lab,
- 18:34was interested in whether this
- 18:36also had knock on effects.
- 18:38Intergenerationally given the importance
- 18:40of moms to their offspring in particular.
- 18:44So what I've been showing you so far is early
- 18:46adversity accruing to a particular female,
- 18:49and the consequences for her own life.
- 18:51What he wanted to know is whether.
- 18:54Early adversity experienced by the mother
- 18:57had cascading effects on her kids survival,
- 19:00even controlling for that kids own
- 19:02exposure to the same sources of adversity.
- 19:05Remarkably remarkably,
- 19:06we see that it does so here again,
- 19:09our survival curves, in this case,
- 19:11survival to reproductive maturation
- 19:13for the offspring of mothers
- 19:15who experienced maternal loss.
- 19:17You know what could have been
- 19:19decades earlier in life,
- 19:20or mothers who experienced that competing
- 19:22younger sibling again in what could
- 19:25have been decades earlier in life?
- 19:27So in both cases kids of moms who
- 19:31experienced early adversity were
- 19:33more likely to to die before they
- 19:36hit their own period of independence.
- 19:38We think we know what's mediating this,
- 19:41at least at a gross level and
- 19:44and that is likely an effect on
- 19:47maternal health or viability.
- 19:48That is, the moms of those.
- 19:50Those second generation
- 19:52offspring to ask this question.
- 19:54Matthew divided up those
- 19:56first four years of life.
- 19:58From birth to earliest maturation,
- 20:00he asked what the survival probability
- 20:04was of offspring in the in the
- 20:07period from age 0 to age 2 as a
- 20:11function of whether mothers were.
- 20:14Able to survive or not during the
- 20:16period in which that offspring would
- 20:17have been age 2 to 4 sodas later,
- 20:21maternal mortality predict something
- 20:24about the survival for offspring
- 20:26earlier in life and for females
- 20:28who either experience maternal loss
- 20:30themselves or competing younger sibling.
- 20:32That's the case.
- 20:33So in other words, if you are a baboon,
- 20:37is the offspring of an individual who
- 20:39experienced early adversity in its own life,
- 20:42that individual is likely to
- 20:43be in poor somatic.
- 20:44Quality in a way that influences
- 20:46whether or not that kid is able to
- 20:49make it to age 2 even if its mother
- 20:51is there the whole time and I'll just
- 20:53tell you that this relationship.
- 20:55This difference between offspring
- 20:56survival as a function of later
- 20:59maternal death does not exist for
- 21:01the offspring of mothers who did not
- 21:04themselves experience early mortality.
- 21:06So we think that this is explained
- 21:09by what's going on with the mother's
- 21:11condition and doesn't necessarily
- 21:13require any sort of complex.
- 21:15For example,
- 21:16epigenetic explanations that that go
- 21:18into sort of transgenerational effects.
- 21:21So in this population we find
- 21:24that as in humans,
- 21:26early life is a critical period for
- 21:28development that affects lifelong survival.
- 21:30Even in a time period that's quite
- 21:32separated from the early life exposures.
- 21:34It appears to be profoundly
- 21:35affected by social resources.
- 21:36In particular,
- 21:37many of the things that pop out to
- 21:40us as individually predictive sources
- 21:42of variance have to do with moms,
- 21:45in particular maternal presence
- 21:47and maternal attention or maternal
- 21:50resources spent.
- 21:51With that particular offspring.
- 21:53Our data suggests that multiple
- 21:55hits compound to influence risk,
- 21:57so the the risk of or of earlier
- 22:01death with higher aces exceeds the
- 22:04explanatory power of looking at each
- 22:06of those individual effects alone,
- 22:08and this has intergenerational consequences,
- 22:11meaning that the viability of an
- 22:14animal that we happen to watch at a
- 22:16given point in time is affected not
- 22:18only by its own experience but by
- 22:20the experiences in previous generations.
- 22:22So I already told you that.
- 22:25But this has major consequences
- 22:27for the the currency of
- 22:29Darwinian fitness, right lifetime,
- 22:31reproductive success,
- 22:32how many offspring females leave behind.
- 22:35So this raises a natural question
- 22:37about why these early life effects
- 22:38have evolved in the 1st place.
- 22:40If this has such costly
- 22:43consequences for fitness,
- 22:44then shouldn't over the course of
- 22:48evolutionary history we and other
- 22:50longer lived primates you know,
- 22:52quit paying attention to
- 22:54those early life experiences.
- 22:56This was a question that a
- 22:57former PhD student of mine,
- 22:58Amanda Lea,
- 22:59is now faculty at Vanderbilt
- 23:01was very interested in,
- 23:03and she attempted to disentangle 2
- 23:05of the predominant hypothesis for
- 23:08why early life effects evolved.
- 23:10These are often used to explain
- 23:12early life effects in humans too,
- 23:14so I think that there is some
- 23:17some generalizability here.
- 23:20The 1st is a class of of explanations
- 23:22I'll refer to as early life programming,
- 23:25adaptive programming,
- 23:26or sometimes you'll see.
- 23:27Adaptive responses which posits
- 23:29that what's going on is that young
- 23:34animals are taking cues from their
- 23:36environment to adjust their phenotype
- 23:38in a way that better prepares
- 23:40them for a similar environmental
- 23:43exposure later in Life OK,
- 23:45and so if you use these kind of fitness
- 23:47nor sorry reaction norm representations,
- 23:50what that means is that individuals
- 23:52who are born in a poor early
- 23:54environment actually do better.
- 23:56If the quality of the environment.
- 23:57Is also poor in adulthood and vice versa.
- 24:00Individuals who are born in a
- 24:03benign environment do better
- 24:04in an environment that are high
- 24:07quality in adulthood relative to
- 24:09that other class of individuals.
- 24:11A major alternative class of hypothesis
- 24:13is what is often termed developmental
- 24:15constraints or a silver spoon effect,
- 24:18which basically posits that good
- 24:21benign early environments are
- 24:23good for you no matter what your
- 24:26adult environment looks like,
- 24:27and so the consequences of early
- 24:30life adversity are because.
- 24:32Individuals have to physiologically
- 24:34adapt to their environment,
- 24:35and they're basically making
- 24:36the best of a bad job.
- 24:39A real challenge with distinguishing these
- 24:41between these two hypothesis is that often,
- 24:44particularly in human natural experiments,
- 24:46what we what we have our data from.
- 24:48Individuals born in poor versus
- 24:50high quality early environments.
- 24:52You can think about classical
- 24:53studies like the Dutch hunger,
- 24:54winter or the Great Leap
- 24:57Forward studies in China,
- 24:58but they're measured in adulthood
- 25:00in relatively benign environments.
- 25:02In other words,
- 25:02we're seeing two of these points,
- 25:04not four of these points,
- 25:05and if you only see two of these
- 25:06points on the right hand side,
- 25:07you can't actually distinguish.
- 25:09Between that crossing pattern,
- 25:11that interaction pattern or a pattern
- 25:13that would be much more consistent
- 25:15with developmental constraints.
- 25:17So we think we can do this in
- 25:20Amboseli because there is a major
- 25:22source of environmental variation
- 25:23that can cause hardship or relative
- 25:26advantage that is completely
- 25:28exogenous to the fabulous themselves,
- 25:30and that's simply defined by
- 25:31patterns of rainfall in Amboseli,
- 25:33which can be quite dry in some years less
- 25:35than rainfall in Phoenix for comparison.
- 25:38So desert like these are
- 25:40hydrological years going back into
- 25:41the 70s, or they can be relatively high,
- 25:45not as high as New Haven.
- 25:46In case you're interested
- 25:47in putting this in context,
- 25:48New Haven get spelled.
- 25:491200 millimeters of precipitation a year,
- 25:52but high enough that we aren't talking
- 25:54about desert like conditions anymore.
- 25:56OK, and of course this variation again is
- 25:59something that the baboon like baboons,
- 26:01nor we have any kind of control over.
- 26:04Now in 2009 we had the equivalent
- 26:06of a weight of a natural experiment
- 26:08in our own natural population,
- 26:10which was the worst drought ever recorded
- 26:12in the history of this ecosystem,
- 26:14and it was compounded by the fact
- 26:16that the year before 2008 was
- 26:18actually also a low rainfall year,
- 26:19so animals were really suffering
- 26:21in the basin.
- 26:22There was large scale die
- 26:24off of large animals.
- 26:25We did not see a lot of mortality
- 26:28consequences in the baboons,
- 26:30but we did see a huge drop in fertility.
- 26:32So here on the Y axis.
- 26:34I'm showing you rates of conception per
- 26:37adult female by hydrological year and this
- 26:40is 2009 where it dropped by about 25%.
- 26:43So the animals are very much
- 26:45feeling these kinds of effects,
- 26:47so this gave us the ability to ask in
- 26:50a poor quality adult environment 2009
- 26:53versus good quality adult environments.
- 26:56So the middle 50% of rainfall years
- 26:59were treating in that sort of way.
- 27:01In this analysis,
- 27:02how did individuals who were born in poor?
- 27:04Early environments during early life
- 27:07droughts do compared to individuals born
- 27:09in modern high quality early environments.
- 27:12In terms of their ability to conceive
- 27:15offspring and also to resume reproductive.
- 27:20Cycling after a period of postpartum minaria.
- 27:24OK,
- 27:25so that's what we'll focus on.
- 27:28These fertility related outcomes.
- 27:29And here's what we get as a result.
- 27:32What we find is that for females who are
- 27:34born in relatively benign environments,
- 27:37there's actually very little
- 27:39difference in their probability of
- 27:42conceiving or resuming cycling.
- 27:44This is conception data.
- 27:45Here in moderate years versus in the drought.
- 27:49They're relatively buffered,
- 27:50although you see a little bit of a decrement.
- 27:53This is actually a comparison within
- 27:55individuals for for females who conceived
- 27:58in both of those types of environments,
- 28:00so these comparisons are going
- 28:02to be centered around 0,
- 28:04whereas for females who were
- 28:05born during droughts,
- 28:06they took a much larger hit in
- 28:09comparison to their own reproductive
- 28:10performance and mop in moderate years.
- 28:13In other words,
- 28:14there is a difference between how well
- 28:16females who were born and droughts and
- 28:18females who were born in good years did,
- 28:20but is in the opposite direction
- 28:22as predicted by the predictive
- 28:24adaptive response model.
- 28:26We actually also see some,
- 28:27some some preliminary evidence for
- 28:29social buffering in this situation
- 28:31for females who were both born in a
- 28:33drought and lived as reproductive adults
- 28:35through that very severe 2009 drought,
- 28:38we find that females were able to maintain
- 28:42their ability to conceive if they were
- 28:45born to high status mothers versus
- 28:47females who were born to low status.
- 28:49Mothers were less able to buffer
- 28:52her against these multiple hits.
- 28:54And so you know, Amanda came to me.
- 28:56And she found this result.
- 28:57She said, well, I think all we're
- 28:59saying is that if you were born in
- 29:01a terrible year and then you had
- 29:02the bad luck of living through,
- 29:04you know one of the worst years on record.
- 29:05And you know you are.
- 29:09Experiencing social disadvantage
- 29:10is the result of being low on a
- 29:13social hierarchy than that is bad.
- 29:14And that's true.
- 29:15I mean, maybe that's not very surprising,
- 29:17but the fact is it is counter to one
- 29:20of the dominant predictions in the
- 29:23literature about why these things happen.
- 29:26So
- 29:27you're going on to that.
- 29:28There's just a little bit of *********
- 29:29that we're hearing from the audio.
- 29:30I'm wondering if there's anything with
- 29:32your microphone or something on your
- 29:34microphone that we could try moving,
- 29:36and it's not. It's not too too bad,
- 29:38it's just a little bit of *********.
- 29:40OK, I can probably switch my
- 29:42microphone. This may switch.
- 29:46This may switch the image
- 29:47for a SEK, so bear with me.
- 29:50Sorry to interrupt you. I just
- 29:51Oh no, no problem. It's better
- 29:54to to actually be able to hear
- 29:56we can. We can hear you fine. It's just
- 29:58a little bit of of of of *********.
- 30:01OK yeah I'm going to switch
- 30:02mikes in just a second once.
- 30:06Just as you did your shadow to Amanda,
- 30:07I thought that was a knife, nice.
- 30:10Correct, OK? Are you seeing a
- 30:12presenter view now or are you seeing
- 30:16no? We're seeing a blank screen?
- 30:18Well, just seeing a square of white
- 30:21square of white, that's not
- 30:22what I want to show you, OK?
- 30:26Yeah, the baboon pictures
- 30:27are far more preferable.
- 30:30Let me let me try and work on that.
- 30:32I can probably go. We've got him.
- 30:33Now we can see your slides, but just OK.
- 30:38And then let me go back to zoom.
- 30:41I'm gonna stop share for just a second.
- 30:43I just fix this problem.
- 30:45Sorry about that Dani.
- 30:46No no, no that's OK.
- 30:47Thank you for telling me.
- 30:51OK.
- 30:55OK, I've just switched.
- 30:57Microphones is that better?
- 30:59We don't hear any *********
- 31:00at the moment then.
- 31:01OK, great and then.
- 31:06Go back to the screen share, oops.
- 31:18OK, are you seeing my slides?
- 31:20We can see your Internet actually.
- 31:23Yeah now we can see your slides
- 31:26and it looks like the way it's
- 31:27supposed to and not not presented.
- 31:29It looks great.
- 31:30OK perfect, thanks so much no problem.
- 31:33So I think the evidence that we have is
- 31:36against the idea of adaptive programming,
- 31:38but much more easily explained
- 31:42by contingently experience,
- 31:43developmental constraints in other words.
- 31:45Females who are born in a
- 31:47disadvantageous environment do
- 31:48worse even in that same type of dis,
- 31:50and fit advantageous environment
- 31:52when they grow up.
- 31:54We actually don't see those effects
- 31:56in moderate years and for females
- 31:59who were born in moderate years.
- 32:01The effect is is much attenuated relative
- 32:04to females who were born in in dry years.
- 32:09Additionally,
- 32:09there are other sources of relative
- 32:11advantage in diversity that can
- 32:12have the same kind of effect,
- 32:14including being born to a relatively
- 32:17socially privileged family.
- 32:20OK, and I'll just note that this is
- 32:22fairly consistent with the pattern that I
- 32:24think is emerging from long lived species,
- 32:27including humans that because
- 32:29of our very long lives,
- 32:32setting a strong, making a strong bet,
- 32:34making a strong prediction from
- 32:36an experience in in utero,
- 32:38or in the first years of life,
- 32:41is probably not wise for animals that live,
- 32:45you know, decades,
- 32:46whereas it may be very wise
- 32:48for a water free or.
- 32:50Or for a tobacco hornworms?
- 32:52OK.
- 32:52So finally I think one of the biggest
- 32:57puzzles that is of shared interest
- 32:59to people interested in early life
- 33:01effects is of course this very
- 33:02general question of how where we can
- 33:04be talking about multiple types of
- 33:06different types of mechanisms from
- 33:08social and behavioral mechanisms
- 33:10to biological mechanisms that are
- 33:12adjusted based on the early life
- 33:14environment and one of the puzzling
- 33:15things about relating early life
- 33:18adversity to phenotypic outcomes
- 33:19later in life is that they don't
- 33:22affect you know single types of
- 33:24outcomes with very clear ideology.
- 33:26But rather tend to have very general
- 33:29effects on a lot of different
- 33:31outcomes that have lots of different
- 33:34underlying mechanisms.
- 33:35So I think a common and influential
- 33:38idea about how this works is through a
- 33:42general process of biological embedding.
- 33:44And here I'm using the criteria
- 33:46defined by herzman,
- 33:48where the environment somehow you know,
- 33:51influences what's going on under
- 33:53the skin is at the physiological
- 33:55and molecular level to influence
- 33:58biological and developmental processes,
- 34:00meaning that systematic differences
- 34:03in experience like being born.
- 34:05Two in a low resource environment
- 34:08and an environment that produces
- 34:10material deprivation or social
- 34:11deprivation can lead to systematically
- 34:14different types of biological
- 34:16states that remain stable overtime.
- 34:19And crucially, to actually mediate,
- 34:22you know this sort of bubble on the left.
- 34:25At the relationship with bubble on
- 34:27the left and the bubble on the right,
- 34:29these differences,
- 34:30whatever changes at that molecular
- 34:32and physiological level,
- 34:33must have the capacity to influence
- 34:36trait variation over the life course.
- 34:38For those interested in social epigenetics,
- 34:43much of this much of the attention to
- 34:46a potential mechanism has therefore
- 34:48focused on the epigenome, and for both,
- 34:50I think reasons of measurement,
- 34:51and because DNA methylation is a relatively
- 34:55stable epigenetic mark to the epigenetic
- 34:59marker of DNA methylation, in particular,
- 35:01that is the addition or removal of a methyl
- 35:05group to invertebrates, typically cytisine.
- 35:08Nucleotides where they're followed
- 35:09by Queens in the genome.
- 35:11So there are potentially about 20 million or
- 35:14so of these CPG sites in in a human genome.
- 35:18So this is thought to be a plausible
- 35:20mechanism in part because DNA methylation
- 35:22is known to be environmentally responsive.
- 35:25It's part of the gene regulatory machinery,
- 35:27and our genome must be able to
- 35:29flexibly respond to its immediate
- 35:31environment throughout life.
- 35:33In fact, this is happening even as we speak
- 35:35as a consequence of what we might have
- 35:38eaten before circadian rhythms and so on.
- 35:40Depending on where in the
- 35:42genome you're talking about.
- 35:43Again, DNA methylation has relatively
- 35:46remarkable fidelity across cell division,
- 35:49and so has the potential to
- 35:52remain stable overtime even from
- 35:54early life into into later years.
- 35:57Evidence that this may in fact be
- 35:59a plausible pathway comes from
- 36:01correlative studies that link
- 36:03early life environmental exposures
- 36:05with epigenetic change in humans.
- 36:07But of course,
- 36:08suffer from the potential confounding
- 36:10of early environments that affect
- 36:12adult environments that are actually
- 36:14immediately responsible for the types
- 36:16of epigenetic patterns that have been
- 36:18documented in many population studies so far.
- 36:22However,
- 36:22I think of a potentially bigger
- 36:24problem is that although we know
- 36:26that DNA methylation can influence
- 36:28gene regulation and therefore change
- 36:30the Nixon expression in a way that
- 36:32it could be phenotypically relevant,
- 36:35it doesn't always do so.
- 36:37And we know this from experimental studies,
- 36:39for example that if used epigenomic
- 36:42editing technologies to specifically
- 36:44change DNA methylation at individual sites,
- 36:47so these are four data from another lab
- 36:50that focused on changing DNA methylation,
- 36:53and a very specific manner.
- 36:55By 4 CPG sites at 1 gene in
- 36:58the genome and looked at it.
- 37:00Effects on expression and only
- 37:02one of these sites is sensitive
- 37:04to DNA methylation lawyers.
- 37:05The other changes are effectively silent.
- 37:08We don't know whether the the cases
- 37:11where early environment has even been
- 37:13correlated with DNA methylation later
- 37:15in life are in that class of silent
- 37:17changes or in the class of things that
- 37:20might have physiological consequences,
- 37:22which are the things that we
- 37:23have to care about.
- 37:24If we believe this is mediating.
- 37:25Early life effects on health and mortality.
- 37:29So we have the opportunity to
- 37:30study this in Amboseli as well,
- 37:32where we can again divorce some of
- 37:34these early and adult environmental
- 37:36processes and separate out different
- 37:38types of early life effects.
- 37:39We can do this because,
- 37:41although most of the research we
- 37:42do on the baboons is non invasive,
- 37:45occasionally we have reason to
- 37:47want to take biological samples,
- 37:48collect morphometric data and so on,
- 37:50and so we periodically engage in in
- 37:54brief and estimations darting in order
- 37:57to collect those sorts of samples.
- 37:59So this is our very talented field
- 38:01assistant Kenya Larry Terry here.
- 38:03You probably can barely see it,
- 38:04but he's holding about a metre
- 38:06long metal tube in his right arm
- 38:08and trying to look as innocuous
- 38:10as possible around these baboons.
- 38:12We wait for a period in which nobody
- 38:14is looking and then very rapidly
- 38:16deliver an anesthetic containing
- 38:17dart at our animals in order to
- 38:19collect these types of samples.
- 38:21And over time we've been able to
- 38:22collect hundreds of these samples,
- 38:24including from individuals where we know
- 38:26a lot about both their early life and
- 38:29what's going on with them in adulthood.
- 38:31We've used a sequencing based method to
- 38:34generate genome scale DNA methylation
- 38:37data for several 100 individuals,
- 38:39including a number of of whom we've
- 38:41actually had repeated sampling,
- 38:43overtime and post quality filtering are
- 38:45able to assess DNA methylation in adulthood.
- 38:49In this period,
- 38:51in blue for these baboons,
- 38:52this is years of life for about
- 38:55half a million sites in the genome.
- 38:58We asked how individual sources
- 39:00of early adversity as well as
- 39:02cumulative early adversity,
- 39:03that sort of Aces score.
- 39:05I talked to you about earlier adding
- 39:07up these individual exposures in
- 39:09the first few years of life or at
- 39:12birth influenced DNA methylation
- 39:14collected in this blue period.
- 39:16We also paid attention to whether
- 39:18animals were born in a relatively high
- 39:21habitat quality environment versus a
- 39:23relatively low habitat quality environment.
- 39:25We had again a sort of natural
- 39:27experiment in our population.
- 39:28Where our animals made a fairly
- 39:30dramatic shift as the quality of
- 39:32their initial habitat declined to
- 39:34a much higher quality environment
- 39:36outside the original area of study.
- 39:40Finally,
- 39:40we included a measure of their
- 39:43adult social circumstance based
- 39:45on dominance rank or the position
- 39:47in the hierarchy for both females
- 39:49and males based on prior evidence
- 39:51from my student Jordan's work that.
- 39:56That dominance rank is a major
- 39:58predictor of differences in gene
- 40:00expression in our population.
- 40:01So all of this work was really
- 40:03led by by Jordan and we're in the
- 40:05process of putting it together now
- 40:07again to just skip to the results.
- 40:09What we find is that early
- 40:11life effects do persist.
- 40:13Do leave a signature in
- 40:15DNA methylation profiles,
- 40:17but that this is really most
- 40:19apparent for those individuals
- 40:20born in that low quality habitat
- 40:22and not the high quality habitat.
- 40:25So what I'm showing you here.
- 40:26On the X axis are the effect sizes
- 40:30of cumulative early adversity on DNA
- 40:33methylation levels multi measured
- 40:35in adulthood for about 470,000.
- 40:37Sites in the genome.
- 40:39They're quite close to 0 for animals
- 40:41born in a resource rich environment,
- 40:43but they move quite further
- 40:45away from zero on average.
- 40:47For those born in low quality
- 40:49habitats and we can see a
- 40:52very similar type of quality.
- 40:54For each of the individual
- 40:56sources of building per city.
- 40:59Investigated separately.
- 41:02So this is what it looks like genome wide.
- 41:05These are the effect sizes in
- 41:07the high quality environment.
- 41:08Individuals born in high quality environment.
- 41:10These are effect sizes for
- 41:12for individuals born in low
- 41:13quality environment for exactly
- 41:15the same sites in the genome.
- 41:17And again, you can see that replicated
- 41:20in individual at individual
- 41:22sites for individual exposures.
- 41:23Basically, individuals who
- 41:25are born during a drought.
- 41:27You can see a market effect of drought
- 41:29if they were born in that low quality
- 41:31habitat that's in that sort of pinkish color.
- 41:33But a much more attenuated effect for
- 41:35those born in high quality habitats.
- 41:37So it looks like we're looking at
- 41:40compounding effects of resource limitation
- 41:42that the whole population is exposed
- 41:45to and individual level exposure to.
- 41:48Early life adversity.
- 41:50So to give you a sense of the
- 41:51relative magnitude of these effects,
- 41:52these are significantly associated
- 41:54CP G sites in the genome.
- 41:56Simply, the number of them of those
- 41:59that we tested based on each of these
- 42:01predictor variables and the major effects
- 42:03other than large scale effects of age,
- 42:05which are expected based on our
- 42:07and other people's previous work,
- 42:09are those habitat quality effects.
- 42:11The difference between being born
- 42:13in an environment looks like this,
- 42:15or exactly the same place in the
- 42:17ecosystem that's been denuded of the major.
- 42:20Dietary resources for baboons.
- 42:22The individual sources of early
- 42:24adversity that matter are are,
- 42:26particularly those also associated
- 42:28with resource deprivation.
- 42:30Drought,
- 42:30loss of a mother early in life,
- 42:32and high levels of resource competition.
- 42:36If the group is is, is dense.
- 42:39This by itself doesn't answer the question,
- 42:41though about whether those types of
- 42:43epigenetic changes are effectively silenced.
- 42:45Maybe they're simply passive
- 42:46biomarkers or early life exposure,
- 42:48or whether they have any potential to mediate
- 42:51downstream effects on health and survival.
- 42:54Part of that question can be
- 42:56answered at least circumstantially,
- 42:57by asking where in the genome,
- 42:59differentially expressed early
- 43:01adversity associated differentially
- 43:02methylated sorry sites fall.
- 43:05The genome is a diverse place in
- 43:07different parts of your DNA sequence
- 43:10have different roles in gene regulation,
- 43:12and so a simple question to ask is whether
- 43:15those differentially methylated sites
- 43:16tend to fall in regulatory elements
- 43:19like gene promoters or enhancers.
- 43:21These elements that tend to loop around
- 43:23physically interact with the promoters
- 43:25of genes to modulate gene expression.
- 43:27Or whether they fall in kind of deserts
- 43:30of genes or regulatory elements
- 43:32unannotated regions of the genome and
- 43:35what we've revealed what we found we think,
- 43:38is a fairly bimodal pattern,
- 43:41where if you look at age
- 43:43differentially expressed sorry,
- 43:45differentially methylated sites.
- 43:46For example,
- 43:47we find that they are enriched in
- 43:49this pinkish color in Unannotated
- 43:50region of the unit.
- 43:51We find a lot of them,
- 43:52but they don't tend to fall in
- 43:54places where we believe they're
- 43:55likely to influence gene regulation.
- 43:58Habitat quality is fairly neutrally
- 44:00spread across the genome,
- 44:01with a little bit of tendency towards
- 44:03more enrichment in these sort of
- 44:05functionally important regions of
- 44:06the genome versus the unannotated,
- 44:08but it's not very striking,
- 44:09whereas we if we look at drought
- 44:12effects or the effects of a social
- 44:13environment at the time of sampling,
- 44:15like male rank, we see a pattern
- 44:17that is opposite to that of age where
- 44:20those differentially methylated
- 44:22sites tend to fall non randomly.
- 44:24In enhancers and gene bodies,
- 44:26that is, regions of the genome.
- 44:28That we believe may be important
- 44:29to the Physiology of the Organism,
- 44:31and then they tend to be depleted
- 44:34in those unannotated regions.
- 44:36Another way to look at this is to use
- 44:38the chromatin states annotated by the
- 44:40road map of the Genomics Consortium.
- 44:43This was done for humans that we can
- 44:45pull over these annotation to baboons.
- 44:47They recognize a number of different sites.
- 44:49You can just think about painting
- 44:51the genome different colors depending
- 44:52on what part of that genome,
- 44:54what that part of the genome
- 44:55is likely to be doing,
- 44:56which is defined in turn by
- 44:58different types of histone marks.
- 44:59As well as the DNA configuration
- 45:02DNA methylation.
- 45:04Where the ones on the top of this
- 45:06list tend to be linked with active
- 45:08regulation and the ones on the bottom
- 45:10of the list tend to be associated
- 45:13with repression or silencing.
- 45:15If we look at age,
- 45:16associated State state sites again,
- 45:18we see under enrichment or depletion
- 45:21in those actively regulated regions
- 45:23of the genome and enrichment in in
- 45:26repressed or quiescent parts of the genome.
- 45:29If we look at socio ecologically
- 45:32associated sites, on the other hand,
- 45:34here are things like habitat quality,
- 45:36drought, or male social status.
- 45:38We see the opposite effect on
- 45:40this left hand side.
- 45:41There's enrichment in regions of the
- 45:43genome that are associated with active
- 45:45regulation in blood cells as opposed
- 45:47to depletion in those age associated sites.
- 45:49We see the same kind of pattern as
- 45:52age or even more neutral pattern
- 45:55for just technical batch effects.
- 45:58Now finally I want to say that.
- 46:00This is. Still circumstantial.
- 46:02What we're saying is that there's
- 46:04an association between a which
- 46:06is early life exposure and B,
- 46:08which is DNA methylation and adulthood,
- 46:10and those associations tend to
- 46:12fall in particular regions of
- 46:14the genome that are probably more
- 46:16interesting than just the background.
- 46:18They don't provide any direct
- 46:19causal evidence is which,
- 46:21which is what you really want to have
- 46:22if you want to argue for epigenetic
- 46:25mediation that an epigenetic change
- 46:26directly influences the phenotype,
- 46:28or at least gene expression as
- 46:31approximate molecular phenotype.
- 46:33So we ended up going after this too.
- 46:36Inspired by some work done by Alexander
- 46:38Stark Lab in Vienna on using massively
- 46:41parallel reporter assays to look at
- 46:44causal effects of DNA sequence on
- 46:46the capacity for regulatory activity.
- 46:49There assay is called star seep
- 46:51and it basically works by randomly
- 46:54shearing or amplifying lots and lots
- 46:56of fragments of the genome and cloning
- 47:00them into little episomal plasmids like.
- 47:02This in a structure so that if the
- 47:05piece you cloned in this little olive
- 47:07piece actually has the potential to
- 47:10drive differential gene regulation
- 47:12when you transfect this little circle
- 47:14DNA into your cell type of interest,
- 47:16then it will cause its own its
- 47:19own sequence to
- 47:20be transcribed. Basically,
- 47:22this green sequence loops around,
- 47:24interacts with the promoter,
- 47:25and drives its own expression in a
- 47:28way that we can track using high
- 47:30throughput sequencing technology.
- 47:31So regions where you end up with a lot of.
- 47:33Seeds when you sequence libraries
- 47:35from this type of assay point
- 47:38to regions of the genome that
- 47:40have active regulatory capacity.
- 47:42So we thought, well, this is really cool.
- 47:45Can we modify this to look at
- 47:47changes in DNA methylation and
- 47:48how those changes in isolation?
- 47:50Just changing DNA methylation influences
- 47:53or fails to influence gene expression.
- 47:56So we ended up tweaking the assay
- 47:59and and producing a separate plasmid
- 48:02PM star seek one which you can
- 48:05actually order yourself from addgene
- 48:08if you're interested and producing
- 48:10the same kind of assay idea, but.
- 48:12But leaving sites targets of DNA
- 48:15methylation vertebrates only in those
- 48:17regions that we clone in in olive and
- 48:19either experimentally methylating them
- 48:21or leaving them experimentally methylated.
- 48:24That means we can compare the regulatory
- 48:26activity of the exact same sequence,
- 48:28and we can do this for hundreds of thousands
- 48:29of fragments in the genome at once,
- 48:31where the only difference between two
- 48:33fragments of the same location is whether
- 48:35those sites are methylated or not,
- 48:37and the results of that assay
- 48:39for like 1 region of the genome
- 48:41looks something like this.
- 48:43This happens to be data from the human
- 48:46genome in and around the gene NF Kappa BIA,
- 48:49where if you see higher levels
- 48:51of RNA produced at that region,
- 48:54higher levels of expression
- 48:56relative to the input DNA.
- 48:58Then that points to regulatory activity,
- 49:01and in this case that happens
- 49:03in the methylated condition.
- 49:04This is an active enhancer,
- 49:06but not when the exact same
- 49:07sequence is methylated,
- 49:08so this was work that was pioneered.
- 49:10This protocol was led by Amanda Lea,
- 49:13the same person who took,
- 49:14but I'm predictive adaptive response stuff,
- 49:16and we generated data for
- 49:19bedroom specifically in work led
- 49:21by my postdoc Dana Lynn.
- 49:23So basically we cross referenced that
- 49:24with all the regions in the genome that
- 49:27we know are differentially methylated.
- 49:28An association with early life drought,
- 49:30for example,
- 49:31or with aging,
- 49:32and what we find is the following
- 49:35of about 200,000 windows.
- 49:36We tested genome wide.
- 49:38I just want to point out that really only a
- 49:41minority of them in a particular cell type
- 49:44have regulatory capacity to begin with,
- 49:46right?
- 49:46Most of CP G sites and most of the genome,
- 49:49whether they're methylated or not,
- 49:50don't do much of anything,
- 49:52but if they are drought associated
- 49:55sites or male ranked associated sites,
- 49:58they're significantly.
- 49:58More likely to fall in one of those
- 50:01active regulatory regions than
- 50:03expected just by background chance,
- 50:05where again if we use age,
- 50:07differentially methylated sites as a control,
- 50:09you see no such signal of active
- 50:12participation in regulation.
- 50:13And so now we were able to start
- 50:15putting together our results like
- 50:17this where for a very particular
- 50:19region of the genome that contains
- 50:21specific set of CPG sites
- 50:22we see. Increases.
- 50:25In RNA relative to DNA,
- 50:28if that region fragment is not methylated,
- 50:30so zero methylation means that you
- 50:32see regulatory activity he there,
- 50:34whereas if that exact same sequence
- 50:37is methylated then we see complete
- 50:40repression of regulatory activity,
- 50:42so pointing this is a way of
- 50:44identifying methylation dependent
- 50:45regulatory activity across the genome.
- 50:47This particular example gives us
- 50:49causal evidence in an in vitro
- 50:51framework that those sites have
- 50:52the capacity to drive differential
- 50:54expression and the particular sites
- 50:56I'm showing you here happen to be.
- 50:59Forked sites.
- 50:59That's it.
- 51:00Just upstream of a gene that's
- 51:02important to T cell receptor activation.
- 51:05We can then couple that with the observation.
- 51:07ULL data from the animals themselves
- 51:09in vivo in a completely unmanipulated
- 51:11environment where we see that,
- 51:13for example,
- 51:14male social status is also associated
- 51:17with levels of DNA methylation,
- 51:20and independently with levels
- 51:22of gene expression.
- 51:23So the correlation is consistent
- 51:25with the causal of the correlation.
- 51:27Evidence in vivo is consistent
- 51:30with the causal evidence in vitro.
- 51:33So to sum up,
- 51:34we have this hypothesis about
- 51:36this pathway that connects early
- 51:39environment to adult phenotypes.
- 51:41Our data suggests that early
- 51:42environments also predict DNA
- 51:44methylation in adulthood.
- 51:45In this natural environment,
- 51:46where there's absolutely no
- 51:48correlation between drought in the
- 51:49first year of life and rainfall
- 51:51at the time of measurement,
- 51:52but that those types of patterns are
- 51:55compounded by further resource limitation.
- 51:58In other words,
- 51:58we're really only seeing this
- 52:00when the animals are exposed
- 52:01to fairly severe deprivation.
- 52:02Material deprivation linked to both
- 52:06a low quality environment as a whole
- 52:08and then further knock on effects
- 52:09of other types of individual adversity.
- 52:12And that leads to substantial
- 52:13heterogeneity across different
- 52:14forms of early life experience.
- 52:16Where,
- 52:16grossly speaking,
- 52:17I would say our data are consistent
- 52:21with effects of deprivation
- 52:23related early life experiences
- 52:25rather than social threat related.
- 52:29Early life experience like being
- 52:31born to a low status mother.
- 52:33Additionally,
- 52:34our data suggests that DNA
- 52:36methylation associated with the
- 52:38social or ecological environment
- 52:40and including sources of early life
- 52:43adversity are more likely to be
- 52:45functionally relevant than background
- 52:47sites identified in the genome,
- 52:49including those that we can detect
- 52:50in the exact same data set in
- 52:52association with age, for example.
- 52:54So that's promising, right?
- 52:56It?
- 52:56It speaks to the potential for this
- 52:59mediating pathway to really matter,
- 53:01but I think that our results also
- 53:03suggest that care is still warranted.
- 53:04Warranted we see this enrichment,
- 53:06but there's lots of individual sites
- 53:08that are early life associated that,
- 53:10as far as we can tell from
- 53:12the data available to us,
- 53:13don't particularly do anything,
- 53:15and if they don't particularly do anything,
- 53:17then they are very unlikely to
- 53:20rely on a causal pathway between
- 53:22early life environment and,
- 53:25for example,
- 53:26compromised health or earlier
- 53:27mortality in adulthood.
- 53:29And I think that the lesson for us
- 53:31is that those correlations that
- 53:33we observe in population studies.
- 53:35So far are really the first step
- 53:37and the second
- 53:38step that we should increasingly
- 53:40think about embedding into studies of
- 53:43environmental or social epigenetics
- 53:45in general are causal tests,
- 53:47especially experimental tests where possible
- 53:50of whether those differences even matter.
- 53:53So in some we see effects of early life
- 53:56environment on later life phenotype that
- 53:59are in many ways strikingly parallel
- 54:01to what's been described in humans.
- 54:04And in fact some of the measurement
- 54:05constructs that we've been using.
- 54:06The baboons are directly borrowed
- 54:08from the literature in humans.
- 54:10These suggest that early life effects
- 54:13on later life health are not something
- 54:16that humans invented and not purely
- 54:20explained by the types of highly developed.
- 54:22Urban environments that many
- 54:24of us live in today.
- 54:27Rather, they're part of the fabric of
- 54:31the societies of primates and other long
- 54:33lived social mammals that have probably
- 54:36predated our species for millions of years.
- 54:39However, because these species,
- 54:40like the baboons live in a relatively
- 54:43simplified environment compared to humans,
- 54:45studying them gives an ability
- 54:47to ask questions about the types
- 54:49of early environments,
- 54:50the way they split between
- 54:52different types of exposure.
- 54:53And the relationship between early
- 54:55life and adulthood that are sometimes
- 54:58difficult to come to grips with in humans.
- 55:00And so with that I just want to thank the
- 55:04people who have led a lot of this work.
- 55:07Susan, Albert Smith,
- 55:08Archie and Jean Altman,
- 55:09who are my fellow travelers on all of
- 55:11the research that has to do with baboons.
- 55:13Matthew Schippel, Susan,
- 55:15former student who led the
- 55:18intergenerational adversity work.
- 55:19My own lab,
- 55:20and particularly Amanda Lea,
- 55:22Jordan Anderson and Dana Lynn,
- 55:24who were the trainees who produced some of
- 55:26the work that I talked to you about today.
- 55:28And if there's time I'd be happy
- 55:30to take any questions.
- 55:34Fantastic thank you so much Jenny and
- 55:36and you do indeed have we do indeed
- 55:39have some time for questions despite me
- 55:42interrupting you mid mid presentation.
- 55:44You know just what. So first of all,
- 55:47ask anyone that wants to raise
- 55:48their hand and they can mute
- 55:50themselves and ask questions.
- 55:51Or feel free to put your question
- 55:54into the chat for Jenny.
- 55:59Hi I have a question. My name
- 56:00is Tara Vaccarino. Are the trust
- 56:04a decent? Are wonderful seminar
- 56:06I can you hear me I wanted yeah I
- 56:10wanted to ask you to what extent
- 56:13this you think that this early effect
- 56:16of the environment are actually
- 56:17acting on the prenatal stage
- 56:19rather than early postnatal?
- 56:20I think in principle there is no
- 56:23proof that drastic conditions like
- 56:25what you're studying like drought
- 56:28for example, or even dominance
- 56:30amongst these primates
- 56:32could actually not affect.
- 56:33Much earlier phases of development,
- 56:36including the brain,
- 56:38not just the blood,
- 56:39which is what you can study postnatally.
- 56:42So what would
- 56:44be a potential Ave to study earlier
- 56:47effect and to what extent do you think
- 56:50they're possible or even likely? Thank
- 56:52you. I think they're entirely possible,
- 56:56and it sort of depends on our
- 56:58ability to get at that question.
- 56:59Depends on the source of
- 57:01early adversity in question,
- 57:03so for some of the things we're
- 57:06considering like early life.
- 57:10Social status, maternal social status
- 57:12or maternal social integration.
- 57:14Those don't change a whole lot in our
- 57:16study system prenatally to postnatally
- 57:18within a short period of time,
- 57:21and so we really can't disentangle
- 57:24whether the crucial point there
- 57:27is in utero or or post Natal.
- 57:30We can do a little bit actually with
- 57:33the drought effects because we have
- 57:35such seasonality in our population
- 57:36in year to year variation differs.
- 57:38So for example, when we were looking
- 57:40at drought effects on fertility,
- 57:42we used the first year of life,
- 57:44but we also did some comparisons
- 57:46with the prenatal period.
- 57:48So if you just take birth
- 57:50minus a year instead,
- 57:52which would cover conception as
- 57:54well in these animals and we
- 57:56get similar kinds of patterns,
- 57:58but they're weaker, which.
- 58:00You know,
- 58:01obviously I think you would
- 58:02take that with a grain of salt,
- 58:04but they would suggest to us by
- 58:05themselves that for that particular
- 58:07exposure the post Natal period maybe
- 58:09more important potentially because
- 58:11mothers are actually buffering
- 58:13their offspring against against.
- 58:17The challenges posed by a
- 58:18drought and they can do so more
- 58:20effectively when they're neutral.
- 58:21But here I'm I'm speculating a little bit,
- 58:23so sometimes we can get it,
- 58:24and sometimes we can't,
- 58:25because those correlations can
- 58:26be quite tight across that
- 58:28about a year and a half or so.
- 58:30And I think Karthik had a question.
- 58:34Great talk is really cool stuff.
- 58:35My question is kind of similar
- 58:37to Doctor Vaccarino's,
- 58:38but one of the interesting things
- 58:39was just the reduced like fertility,
- 58:41like or like having less children.
- 58:43And I mean I could think of
- 58:44a lot of causes for that.
- 58:46Like you know their eggs are less
- 58:47viable or they change their behavior
- 58:49so they're like having less like
- 58:51intercourse or the fact that like
- 58:52just 'cause of their like hierarchy,
- 58:54they just have less opportunity.
- 58:56Have you looked at?
- 58:57Like what is the actual
- 58:58like granular cause of
- 58:59this change in like?
- 59:02Yeah, so in in that severe drought they
- 59:05just stopped cycling and I think the
- 59:08the rationale for that is very similar
- 59:11to reproductive biology in humans,
- 59:13which is when you know energy
- 59:16expenditures exceed energy intake.
- 59:19We stop cycling. I mean you see that,
- 59:20for example in athletes,
- 59:22but you also see it in in Syria in
- 59:26situations of severe caloric deprivation.
- 59:28Baboons have actually.
- 59:30In many ways,
- 59:31very similar reproductive biology,
- 59:32so I think that's what's happened.
- 59:34They're not getting pregnant because
- 59:36they're they're they're not ovulating.
- 59:38But
- 59:38that would be like 'cause
- 59:39there was differences between like the
- 59:41higher status versus the lower status,
- 59:43like the higher status it would
- 59:45affect both of them, right?
- 59:46'cause they're both starving,
- 59:47but it seemed like it wasn't as effective.
- 59:48So what would be like the mechanism
- 59:50where effects one at the other?
- 59:52Yeah, so that I can tell you with
- 59:55less certainty, but one of the reasons
- 59:57that being a high status female baboon
- 59:59is probably a nice thing to be.
- 01:00:01Is a nice thing to be is not only because
- 01:00:04they suffer reduced much less targeting,
- 01:00:07social targeting by other animals, right?
- 01:00:09There's a lot of reinforcement
- 01:00:11of hierarchies in baboons,
- 01:00:13so there's a lot of psychosocial stress
- 01:00:15as well, but because you know it,
- 01:00:17it it actually increases their
- 01:00:19access to resources.
- 01:00:20They have the ability to displace
- 01:00:23other animals from areas where
- 01:00:25food might still exist,
- 01:00:26and so I suspect that in energetic
- 01:00:28rationale has a big role to play.
- 01:00:30That's certainly.
- 01:00:31That's for example,
- 01:00:32the reason why we think females who
- 01:00:34are higher status have shorter inter
- 01:00:36birth intervals than females who
- 01:00:38are low status in our population.
- 01:00:40They just come back to reproductive
- 01:00:42condition faster.
- 01:00:43It's shorter postpartum area,
- 01:00:45interesting, cool, thanks sure.
- 01:00:50I'm very did you have a
- 01:00:52question there or Preston?
- 01:00:54Yes, Preston has a question.
- 01:00:57Question do you want to unmute there?
- 01:00:59Yep, I'm Preston hi.
- 01:01:04This was this was fascinating.
- 01:01:06I I was really intrigued by.
- 01:01:08I was just wondering with
- 01:01:10the causes of death.
- 01:01:12I don't know if if you knew
- 01:01:13any difference in the causes of
- 01:01:15death with those who have the
- 01:01:16social hits versus those who are
- 01:01:18able to live a long happy life
- 01:01:19and had that privilege kind of
- 01:01:21lifestyle you're talking on it.
- 01:01:22I don't know if there's anything
- 01:01:23on that. We have limited information on
- 01:01:27cause of death because we can't do you know,
- 01:01:30full clinical workups of dead baboons.
- 01:01:32And honestly we barely recovered
- 01:01:34their bodies in a state where we
- 01:01:37would be able to do that, right?
- 01:01:39'cause so so I'll say the the
- 01:01:41proximate cause of death for most of
- 01:01:43our animals is they got eaten by by.
- 01:01:45Leopard or a lion or something like that?
- 01:01:48You know we do see pathologies and we record
- 01:01:50wounds and pathologies over the the lifespan.
- 01:01:52But they're pretty crude and so the
- 01:01:55short answer is, we really wish we knew.
- 01:01:58But everything I showed you today is an
- 01:02:01all 'cause mortality sort of situation.
- 01:02:03We could parse some of the individuals
- 01:02:05who we have better data for,
- 01:02:06but that just drops our sample size a lot.
- 01:02:10Thank you I. I imagine that
- 01:02:12being depressed probably makes
- 01:02:13you more likely to be eaten,
- 01:02:15so I I think that's.
- 01:02:16It make probably makes you slower,
- 01:02:18probably makes you less liked by
- 01:02:20your your social peers if you're
- 01:02:23causing them difficulties too,
- 01:02:24so I think it makes sense.
- 01:02:25I just thank you this is this is great.
- 01:02:28Thanks, I know we've run
- 01:02:30a little bit over time,
- 01:02:30but Amanda does have her hand raised,
- 01:02:32so Amanda,
- 01:02:32would you like to ask a question?
- 01:02:34Thank
- 01:02:35you. Jenny is great talk.
- 01:02:36I always love hearing a research
- 01:02:37and as a treat to hear about baboons
- 01:02:40in a world where consumed
- 01:02:42by my cats. So but related.
- 01:02:47I was struck by an image near
- 01:02:48the end of your talk where a baboon
- 01:02:50mother and infant appeared to be engaging
- 01:02:53in some face to face mutual gazing,
- 01:02:56and this led me to wonder.
- 01:02:58Are you guys looking at or
- 01:03:00thinking of looking at?
- 01:03:02You know mother infant interactions
- 01:03:03in the middle period and how this
- 01:03:06might be influencing infant outcomes.
- 01:03:08Yeah, absolutely.
- 01:03:09So that was the last part
- 01:03:12of Matthew Zippel thesis,
- 01:03:14so he was the the former PhD
- 01:03:16student who did the work on
- 01:03:18intergenerational adversity, right?
- 01:03:19And so where we are there is that we think
- 01:03:22OK moms who experience early adversity.
- 01:03:24They grow up and then they have
- 01:03:28more difficulty keeping their kids
- 01:03:30alive and that's the phenomenon.
- 01:03:32But it's not the explanation right?
- 01:03:34And we think that they're having
- 01:03:36more difficulty because they
- 01:03:37themselves are in poor condition.
- 01:03:39Well,
- 01:03:39in order for that to translate to the kid,
- 01:03:41I mean there are a few different
- 01:03:42ways that could happen,
- 01:03:43but one is certainly in their
- 01:03:46interaction and caretaking style,
- 01:03:48and so he's been aggregating very
- 01:03:50very granular data on mother infant
- 01:03:53pairs to try and understand what
- 01:03:56the differences in sort of very,
- 01:03:58very granular levels of experience are
- 01:04:00for the kids of moms who have those.
- 01:04:03Those adverse early experiences
- 01:04:05versus those that don't,
- 01:04:07and they certainly appear to be different.
- 01:04:09Although not in ways that we completely
- 01:04:11have our fingers on yet right,
- 01:04:12they spend more time with adult males.
- 01:04:14For instance,
- 01:04:15they spend more time away from Mom.
- 01:04:19Who is driving that behavior
- 01:04:21is not entirely clear yet,
- 01:04:23but hopefully we'll get a little
- 01:04:26bit more more of an understanding
- 01:04:28as as that analysis proceeds.
- 01:04:31I want to see thank you.
- 01:04:33I know we are, we're time,
- 01:04:35but I if there are any trainees
- 01:04:37that are still on the line that
- 01:04:39would like to ask any questions
- 01:04:41please do now is your opportunity.
- 01:04:43Any other questions from the audience?
- 01:04:48And you know, I just when I,
- 01:04:50when you're presenting your
- 01:04:52developmental constraints versus
- 01:04:53the predictive adaptive response,
- 01:04:54really resonated with me.
- 01:04:56Because obviously,
- 01:04:56with the kind of work I do with exposure
- 01:04:59to prenatal anxiety or depression,
- 01:05:00you know the clinical implications
- 01:05:02of saying the predictive adaptive
- 01:05:04response is the best fit.
- 01:05:05Model is actually really appalling,
- 01:05:07because it suggests that you shouldn't
- 01:05:09treat anxiety or depression.
- 01:05:11Pregnancy obviously makes no sense at all,
- 01:05:13so I can't really subscribe to
- 01:05:14the predictive adaptive response.
- 01:05:15And in the context, so.
- 01:05:17Mental anxiety and depression or
- 01:05:18perinatal anxiety and depression.
- 01:05:19So the developmental constraint
- 01:05:20model really seems to fit a little
- 01:05:22bit better with the data that I've
- 01:05:23seen from my my own research as well,
- 01:05:25you know, Karen, as you probably have,
- 01:05:27I've seen a couple of papers that
- 01:05:29actually do go down that path.
- 01:05:31Yeah, well, we shouldn't try to
- 01:05:34address this because you know,
- 01:05:36the phenotype is meant to be matched.
- 01:05:39And I, I think I think that's problematic
- 01:05:42from a variety of perspectives.
- 01:05:45And beyond, whether or not one hypothesis,
- 01:05:49one class of models is a better
- 01:05:50explanation versus the other,
- 01:05:51it also seriously conflates what
- 01:05:55evolution may have produced with what we
- 01:05:57might want our societies to look like.
- 01:06:00And those are not not always
- 01:06:02the same thing, right?
- 01:06:04So
- 01:06:05exactly. Yeah, well, we've got
- 01:06:07messages coming and saying great talk.
- 01:06:09I'd just like to reiterate that
- 01:06:11and thank you once again Jenny,
- 01:06:12you have an open invitation to New Haven.
- 01:06:14We will get you here.
- 01:06:15We will make that pizza comparison
- 01:06:17happen that we promised.
- 01:06:19But please join me once again in thanking Dr.
- 01:06:21Chung for a wonderful presentation.
- 01:06:23Thanks to all of you. I really
- 01:06:25appreciate the opportunity to do
- 01:06:26this and I'm sorry I couldn't be
- 01:06:27with you in person.
- 01:06:28Oh my God will make it happen.
- 01:06:31Wonderful, I think we'll stop
- 01:06:32the recording that bye bye.
- 01:06:33Jennie thanks bye.