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Crypts, Villi, & Tissue Function - The Sumigray Lab at Yale School of Medicine

June 22, 2026

Transcript

  • 00:07In the small intestine,
  • 00:09which is the majority of
  • 00:10your digestive tract, you have
  • 00:12crypts and villi. So villi
  • 00:14are these finger like projections
  • 00:16that stick out.
  • 00:17They're important for nutrient absorption.
  • 00:20A crypt is the intestinal
  • 00:22stem cell niche.
  • 00:23It's just this cute little
  • 00:25cup
  • 00:26that sits in the intestine
  • 00:27and the stem cells sit
  • 00:28at the very bottom of
  • 00:28it, and that forms during
  • 00:30during development.
  • 00:32What happens in a crypt?
  • 00:33So many things happen in
  • 00:34a crypt. The intestinal stem
  • 00:35cells sit at the bottom,
  • 00:37and they divide, and they
  • 00:38make daughter cells, progeny, that
  • 00:39can then move up the
  • 00:40crypt. And once they move
  • 00:41up the crypt, they're going
  • 00:43to lose their ability to
  • 00:44divide anymore, and they're gonna
  • 00:46move into the villus, which
  • 00:47are these these nutrient absorbers.
  • 00:49And so every cell starts
  • 00:50in a crypt, and it
  • 00:51gets to the tip of
  • 00:52the villus within a few
  • 00:53days, and then it dies,
  • 00:53and its job is done.
  • 00:54And so it's a really
  • 00:55fast process that's happening all
  • 00:57the time.
  • 01:03Our goal is to understand
  • 01:04how cellular behaviors
  • 01:06and function
  • 01:07converge with physical forces
  • 01:09to generate functional tissue, both
  • 01:11in development. And then once
  • 01:12you generate this structure, how
  • 01:14do you maintain it? Shape
  • 01:15is part of function. It's
  • 01:17not just some sort of
  • 01:18passive thing that happens. It's
  • 01:19actually really contributing to
  • 01:22how cells sense and respond
  • 01:24to their environment. So we
  • 01:25know that the the stem
  • 01:27cells in the crypt require
  • 01:28certain signals to see certain
  • 01:30signals and respond to certain
  • 01:31signals to both maintain
  • 01:33their identity as a stem
  • 01:34cell, but also to know
  • 01:35when to divide. And if
  • 01:37you start messing with the
  • 01:38shape of that crypt, they
  • 01:40see signals differently because now
  • 01:41they're exposed to them differently.
  • 01:43There's all this constant turnover.
  • 01:45How do we actually make
  • 01:46sure that cells are doing
  • 01:47what they're supposed to do
  • 01:48all the time? And we've
  • 01:49been really discovering these new
  • 01:50patterns in the intestine that
  • 01:51we didn't know existed before.
  • 01:53We wanna understand how do
  • 01:55they contribute to the intestines
  • 01:57function as this nutrient absorber.
  • 02:04We're really big into microscopy.
  • 02:05We do live tissue imaging
  • 02:07and also three d quantitative
  • 02:09microscopy
  • 02:10as well as we use
  • 02:11intestinal organoid models to do
  • 02:13more mechanistic studies.
  • 02:16We've been getting really into
  • 02:17biophysics lately and understanding how
  • 02:20cells are sort of sensing
  • 02:22or responding to these forces
  • 02:23like I said, and we
  • 02:24think that tissue architecture is
  • 02:25really important in that. So
  • 02:26the shape of the intestine
  • 02:27actually contributes
  • 02:29a lot to the turnover
  • 02:31of the cells or how
  • 02:32they're behaving and moving. We're
  • 02:32really excited about understanding how
  • 02:34the biophysical principles of the
  • 02:35tissue and the cellular behaviors
  • 02:37can actually help us understand
  • 02:38how to heal faster in
  • 02:40these degenerative conditions.
  • 02:47These can be really relevant
  • 02:49in disease like cancer where
  • 02:51you have not enough turnover
  • 02:52and too much proliferation
  • 02:54or in inflammatory conditions like
  • 02:56IBD or even autoimmune like
  • 02:58celiac where you're losing too
  • 03:00many cells.
  • 03:01The hope is, of course,
  • 03:03can we sort of use
  • 03:04these principles
  • 03:05as therapeutics?
  • 03:06Not to necessarily treat the
  • 03:08underlying disease, but for example,
  • 03:10in IBD,
  • 03:11you have all of this
  • 03:12inflammatory response happening, and then
  • 03:14that decreases barrier function of
  • 03:15your gut because you're losing
  • 03:16all these cells, which then
  • 03:17increases inflammation.
  • 03:19If we can make the
  • 03:19epithelial cells stop responding and
  • 03:22actually heal and make a
  • 03:23new barrier, can we actually
  • 03:25dampen that inflammatory response?
  • 03:28I think Yale is one
  • 03:29of the most collaborative environments
  • 03:30and places I've ever been.
  • 03:32Yale has a really deep,
  • 03:34strong history in cell biology,
  • 03:36cytoskeleton,
  • 03:37and also genetics
  • 03:39and quantitative biology,
  • 03:40allowing me to interface with
  • 03:42different fields and can actually
  • 03:43push our research further and
  • 03:45in different directions.