2025
Refining breast cancer genetic risk and biology through multi-ancestry fine-mapping analyses of 192 risk regions
Jia G, Chen Z, Ping J, Cai Q, Tao R, Li C, Bauer J, Xie Y, Ambs S, Barnard M, Chen Y, Choi J, Gao Y, Garcia-Closas M, Gu J, Hu J, Iwasaki M, John E, Kweon S, Li C, Matsuda K, Matsuo K, Nathanson K, Nemesure B, Olopade O, Pal T, Park S, Park B, Press M, Sanderson M, Sandler D, Shen C, Troester M, Yao S, Zheng Y, Ahearn T, Brewster A, Falusi A, Hennis A, Ito H, Kubo M, Lee E, Makumbi T, Ndom P, Noh D, O’Brien K, Ojengbede O, Olshan A, Park M, Reid S, Yamaji T, Zirpoli G, Butler E, Huang M, Low S, Obafunwa J, Weinberg C, Zhang H, Zhao H, Cote M, Ambrosone C, Huo D, Li B, Kang D, Palmer J, Shu X, Haiman C, Guo X, Long J, Zheng W. Refining breast cancer genetic risk and biology through multi-ancestry fine-mapping analyses of 192 risk regions. Nature Genetics 2025, 57: 80-87. PMID: 39753771, PMCID: PMC12184877, DOI: 10.1038/s41588-024-02031-y.Peer-Reviewed Original ResearchConceptsFine-mapping analysisAssociation signalsRisk lociBreast cancer genetic riskGenome-wide association study dataBreast cancer risk lociFemale breast cancer casesGenome-wide association studiesCancer genetic riskBreast cancer geneticsBreast cancer riskFunctional genomics dataCredible causal variantsCancer risk lociGenetic risk lociBreast cancer casesSingle-cell RNA sequencingBreast cancerCausal variantsFine-mappingGenomic dataAssociation studiesCancer riskCancer geneticsCancer cases
2017
Dissecting Pathway Disturbances Using Network Topology and Multi-platform Genomics Data
Zhang Y, Linder M, Shojaie A, Ouyang Z, Shen R, Baggerly K, Baladandayuthapani V, Zhao H. Dissecting Pathway Disturbances Using Network Topology and Multi-platform Genomics Data. Statistics In Biosciences 2017, 10: 86-106. PMID: 37388623, PMCID: PMC10309155, DOI: 10.1007/s12561-017-9193-0.Peer-Reviewed Original ResearchMolecular regulatory elementsCopy number variantsRegulatory elementsMRNA moleculesPathway-based analysisBRAF pathwayCancer Genome Atlas (TCGA) projectMultiple tumor lineagesTumor-specific aberrationsRegulatory topologyRelevant copy number variantsDiverse cancer typesMultiple omicsGenomic dataMajor geneCancer typesGene expressionSingle-platform analysisOncogenic pathwaysNumber variantsMethylationComplex diseasesTumor lineageAtlas projectPathway
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