Upasna Srivastava
Associate Research Scientist in NeurologyCards
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Research
Publications
2026
MicroRNA clustering in pediatric asthma reveals differential corticosteroid responsiveness
Yang M, Srivastava U, Kho A, Tiwari A, Wang A, Piparia S, Weiss S, McGeachie M, Tantisira K. MicroRNA clustering in pediatric asthma reveals differential corticosteroid responsiveness. Pediatric Allergy And Immunology 2026, 37: e70374. PMID: 42129970, PMCID: PMC13172431, DOI: 10.1111/pai.70374.Peer-Reviewed Original ResearchConceptsChildhood Asthma Management ProgramClinical characteristicsPathway enrichment analysisChildhood Asthma Management Program participantsPeripheral blood eosinophil countReceptor-related signaling pathwaysEosinophil participationIL-4/IL-13 signalingBlood eosinophil countAsthma clustersVariable treatment responseBaseline airway hyperresponsivenessIL-4/IL-13Enrichment analysisBiological pathwaysTranscriptional pathwaysBudesonide treatmentExpression patternsLung function profileSignaling pathwayExpression profilesLung function changesPediatric patientsAirway hyperresponsivenessBaseline demographics0231 Brain Transcriptomics and Synaptosome Proteomics Reveal Cellular Stress and Synapse-Specific Compensatory Changes Induced by Chronic Sleep Disruption
Espinosa-Garcia C, Kour D, Srivastava U, Malepati S, Kumar P, Parhizkar S, Jang W, Kumari R, Henley M, Liu X, Bitarafan S, Tobin B, Wood L, Faundez V, Rangaraju S. 0231 Brain Transcriptomics and Synaptosome Proteomics Reveal Cellular Stress and Synapse-Specific Compensatory Changes Induced by Chronic Sleep Disruption. Sleep 2026, 49: a101-a102. DOI: 10.1093/sleep/zsag091.0231.Peer-Reviewed Original ResearchChronic SDSleep disruptionCellular stressAD riskGene expressionMale wild-type miceLabel-free quantitative mass spectrometryUnfolded protein responseWild-type miceAlzheimer's diseaseQuantitative mass spectrometryChronic sleep disruptionProgression of ADSleep lossGene Set Variation AnalysisBrain tissueMitochondrial proteinsSleep control groupP38 MAPK pathwaySD effectProtein responseTranscriptional responseBrain transcriptomeSynapse dysfunctionProteomic effectsIntegrative multi-omics and bioinformatics in the post-genomic era: From high-throughput sequencing to microbial systems biology
Singh S, Al-zharani M, Barasarathi J, Tan C, Jaiswal S, Srivastava U, Sagar A, Sayyed R. Integrative multi-omics and bioinformatics in the post-genomic era: From high-throughput sequencing to microbial systems biology. Current Genomics 2026, 27: 47-57. DOI: 10.1016/j.curgen.2026.06.003.Peer-Reviewed Original ResearchMicrobial systems biologyNext-generation sequencingPost-genomic eraSystems biologyMulti-OmicsAutomated functional annotationMicrobiome-based diagnosticsHost-microbe relationshipsBatch effect correctionIntegrative multi-omicsAdvanced sequencing technologiesIntegrative multi-omics analysisMicrobial community profilesMulti-omics analysisMicrobial genomesSequence assemblyEukaryotic microbesOxford NanoporeBioinformatics pipelineFunctional annotationSequencing platformsMicrobial physiologySequencing technologiesIndustrial biotechnologyBioinformatics workflowNeuroinflammatory stress preferentially impacts synaptic MAPK signaling and mitochondria in excitatory neurons
Espinosa-Garcia C, Srivastava U, Kumar P, Kour D, Malepati S, Tobin B, Xiao H, Sunna S, Bowen C, Cheng L, Bagchi P, Duong D, Whitworth T, Liu X, Seyfried N, Wood L, Faundez V, Rangaraju S. Neuroinflammatory stress preferentially impacts synaptic MAPK signaling and mitochondria in excitatory neurons. Molecular Neurodegeneration Advances 2026, 2: 17. PMID: 41953673, PMCID: PMC13053539, DOI: 10.1186/s44477-026-00024-1.Peer-Reviewed Original ResearchSynaptic proteomeSynaptic compartmentsMAPK signalingDifferential centrifugationBiotinylated in vivoCo-expression network analysisBiochemical analysisRelevant to ADTherapeutically relevant insightsBiotinylated proteinsProtein modulesProtein translationMicroglial genesIn vivo modelsEffects of neuroinflammationSynapse-specific effectsProteome modulationSynaptic vesiclesMitochondrial functionNetwork analysisNeuroinflammatory stressCo-expressionMouse neuronsUltrastructural assaysNeuronal proteinsFunctional interactions of Kv1.3 channels in microglia and T cells and their implications in neurodegeneration
Kour D, Srivastava U, Eddy T, Mehta L, Kumari R, Rangaraju S. Functional interactions of Kv1.3 channels in microglia and T cells and their implications in neurodegeneration. Current Opinion In Immunology 2026, 100: 102757. PMID: 41833234, DOI: 10.1016/j.coi.2026.102757.Peer-Reviewed Reviews, Practice Guidelines, Standards, and Consensus StatementsAlzheimer's diseaseExpression patternsProtein-protein interactionsFunctional interactionsCell typesMicroglia-driven neuroinflammationKv1.3 channelsT cellsGenetic datasetsCellular homeostasisCell statesT cell-mediated autoimmunityVoltage-gated potassium channelsCalcium channelsImmune cellsPotassium channelsCellsKv1.3Network analysisImmune functionInteractomeMechanistic studiesMicrogliaNeuroinflammationHomeostasisChapter 3 Databases for genome and genomic information
Hafeez A, Srivastava U, Gupta M. Chapter 3 Databases for genome and genomic information. 2026, 73-108. DOI: 10.1016/b978-0-443-21980-1.00018-8.ChaptersGenome databaseSequencing technologiesGenomic dataNext generation sequencing technologiesVolume of genomic dataHigh-throughput sequencing technologyComplexity of genomic dataGeneration sequencing technologiesSingle-nucleotide polymorphismsGene expression patternsGenomic informationGenetic compositionDNA sequencesGenetic variationGenomeRegulatory componentsBiology toolsPhenotypic characteristicsExpression patternsGenetic varietyBiological researchPhenotypic featuresDisease mechanismsGenesPrecision medicineChapter 8 Advances in transcriptomics data analysis
Kanchan S, Kesheri M, Srivastava U, Jayaswal P, Gupta M. Chapter 8 Advances in transcriptomics data analysis. 2026, 227-252. DOI: 10.1016/b978-0-443-21980-1.00020-6.ChaptersTranscriptome data analysisRNA-seqAdvent of single-cell RNA sequencingRNA sequencingSingle-cell RNA-seqAnalysis of gene expression profilesRNA-seq dataGene expression dynamicsCellular gene expressionSingle-cell RNA sequencingHigh-throughput studiesGene expression profilesSingle-cell levelMulticellular organismsMethod to sequenceScRNA-seqExpression dynamicsGene expressionCellular heterogeneityTranscriptomeExpression profilesDownregulation of mRNASequenceMRNACell subtypes
2025
The protein interactome of the Neuron Specific Gene family (NSG1-3)
Rodriguez AS, Overby M, Srivastava U, Chander P, Vega L, Wilson S, Zychowski KE, Rangaraju S, Kaastrup-Müeller H, Weick JP. The protein interactome of the Neuron Specific Gene family (NSG1-3). bioRxiv [Preprint]. 2025 Dec 10:2025.12.07.692831. doi: 10.64898/2025.12.07.692831. PMID: 41415429; PMCID: PMC12710647.Peer-Reviewed Original ResearchIdentification of Novel Kv1.3 Channel-Interacting Proteins Using Proximity Labelling in T-Cells
Kour D, Bowen C, Srivastava U, Nguyen H, Kumari R, Kumar P, Brandelli A, Bitarafan S, Tobin B, Wood L, Seyfried N, Wulff H, Rangaraju S. Identification of Novel Kv1.3 Channel-Interacting Proteins Using Proximity Labelling in T-Cells. Cellular Physiology And Biochemistry 2025, 0: 0-0. PMID: 41277224, PMCID: PMC12989817, DOI: 10.33594/000000823.Peer-Reviewed Original ResearchConceptsT cell-mediated autoimmunityT cellsKv1.3 channelsImmune cellsImmune mechanismsBiotin ligase TurboIDCytokine-mediated signaling pathwayProtein-protein interactionsProtein trafficking machineryT cell receptor complexActivated T cellsInnate immune cellsChannel-interacting proteinsCell surface proteinsJurkat T cellsCell junction proteinsTrafficking machineryGenetic risk factorsProtein interactorsProximity labelingBiotinylated proteinsImmunity proteinCo-ImmunoprecipitationMigrating proteinsC-terminusMultiresolution Insights into Single-Cell Landscapes: Integrating Genomics, Epigenomics, and Proteomics for Brain Studies
Srivastava, U., Sukreet, S., Kanchan, S., Kesheri, M., Gupta, M.K. (2025). Multiresolution Insights into Single-Cell Landscapes: Integrating Genomics, Epigenomics, and Proteomics for Brain Studies. In: Kesheri, M., Kanchan, S., Häder, DP., Sinha, R.P. (eds) Multi-Omics in Biomedical Sciences and Environmental Sustainability. Springer, Singapore.Peer-Reviewed Original Research
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Neurology
Rangaraju Lab , 300 George Street
NEW HAVEN, Connecticut 06511
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New Haven, CT 06511