2024
Mine yOur owN Anatomy: Revisiting Medical Image Segmentation With Extremely Limited Labels
You C, Dai W, Liu F, Min Y, Dvornek N, Li X, Clifton D, Staib L, Duncan J. Mine yOur owN Anatomy: Revisiting Medical Image Segmentation With Extremely Limited Labels. IEEE Transactions On Pattern Analysis And Machine Intelligence 2024, 46: 11136-11151. PMID: 39269798, DOI: 10.1109/tpami.2024.3461321.Peer-Reviewed Original ResearchMedical image segmentationImage segmentationMedical image segmentation frameworkContext of medical image segmentationLong-tailed class distributionStrong data augmentationsIntra-class variationsSemi-supervised settingData imbalance issueImage segmentation frameworkMedical image analysisMedical image dataSupervision signalsContrastive learningBenchmark datasetsUnsupervised mannerLabel setsData augmentationSegmentation frameworkDomain expertisePseudo-codeImbalance issueModel trainingMedical imagesSegmentation model
2022
Incremental Learning Meets Transfer Learning: Application to Multi-site Prostate MRI Segmentation
You C, Xiang J, Su K, Zhang X, Dong S, Onofrey J, Staib L, Duncan J. Incremental Learning Meets Transfer Learning: Application to Multi-site Prostate MRI Segmentation. Lecture Notes In Computer Science 2022, 13573: 3-16. PMID: 37415747, PMCID: PMC10323962, DOI: 10.1007/978-3-031-18523-6_1.Peer-Reviewed Original ResearchIncremental learningMedical image segmentation tasksMulti-site datasetImage segmentation tasksMedical image segmentationProstate MRI SegmentationComputation resourcesMedical datasetsSegmentation taskImage segmentationSegmentation frameworkEmbedding featuresBenchmark datasetsMRI segmentationTraining dataTarget domainLearning approachPractical deploymentDomain-specific expertiseCompetitive performanceDatasetTraining schemePrior workSegmentationSingle modelAtlas-Based Semantic Segmentation of Prostate Zones
Zhang J, Venkataraman R, Staib L, Onofrey J. Atlas-Based Semantic Segmentation of Prostate Zones. Lecture Notes In Computer Science 2022, 13435: 570-579. PMID: 38084296, PMCID: PMC10711803, DOI: 10.1007/978-3-031-16443-9_55.Peer-Reviewed Original ResearchSegmentation resultsSemantic segmentation frameworkSemantic segmentation resultsDice similarity coefficient valuesSemantic segmentationInference stageSegmentation frameworkSegmentation performanceExternal test datasetTest datasetRegion of interestSegmentationAnatomical atlasHyperparametersSimilarity coefficient valuesAnatomical informationGitHubUsersDatasetProstate zonesCodeFrameworkInformation