2024
Monte-Carlo Frequency Dropout for Predictive Uncertainty Estimation in Deep Learning
Zeevi T, Venkataraman R, Staib L, Onofrey J. Monte-Carlo Frequency Dropout for Predictive Uncertainty Estimation in Deep Learning. 2024, 00: 1-5. DOI: 10.1109/isbi56570.2024.10635511.Peer-Reviewed Original ResearchArtificial neural networkState-of-the-artMedical image dataPredictive uncertainty estimationBiomedical image dataImage dataOptimal artificial neural networkMC dropoutDropout approachSource-codeDrop-connectDeep learningNeural networkSignal spaceMonte-CarloPrediction uncertaintyUncertainty estimationDiverse setComprehensive comparisonPrediction scenariosDeepPosterior predictive distributionRepositoryDecision-makingNetworkChapter 20 Motion and deformation recovery and analysis
Duncan J, Staib L. Chapter 20 Motion and deformation recovery and analysis. 2024, 519-548. DOI: 10.1016/b978-0-12-813657-7.00033-9.Peer-Reviewed Original ResearchArtificial neural networkData-driven approachDeep learningMedical imagesOptical flow methodMotion estimationNeural networkDense flow fieldLocal informationShape trackingFeature trackingAlgorithm performanceMedical imagingExample applicationUse of modelsDeformation recoveryFlow fieldTrackingDeformation analysisKalman filteringMotion analysisBiomechanical deformationFlow methodDeformationEvaluation approach
2020
Automated detection and delineation of hepatocellular carcinoma on multiphasic contrast-enhanced MRI using deep learning
Bousabarah K, Letzen B, Tefera J, Savic L, Schobert I, Schlachter T, Staib LH, Kocher M, Chapiro J, Lin M. Automated detection and delineation of hepatocellular carcinoma on multiphasic contrast-enhanced MRI using deep learning. Abdominal Radiology 2020, 46: 216-225. PMID: 32500237, PMCID: PMC7714704, DOI: 10.1007/s00261-020-02604-5.Peer-Reviewed Original ResearchConceptsDeep convolutional neural networkAverage false positive rateDice similarity coefficientU-NetDeep learning algorithmsConvolutional neural networkTest setMean Dice similarity coefficientRandom forest classifierDCNN methodDCNN approachDeep learningNet architectureLearning algorithmNeural networkLiver segmentationManual 3D segmentationForest classifierGround truthManual segmentationFalse positive rateCorresponding segmentationSegmentationMultiphasic contrast-enhanced MRIThresholdingSparse Data–Driven Learning for Effective and Efficient Biomedical Image Segmentation
Onofrey JA, Staib LH, Huang X, Zhang F, Papademetris X, Metaxas D, Rueckert D, Duncan JS. Sparse Data–Driven Learning for Effective and Efficient Biomedical Image Segmentation. Annual Review Of Biomedical Engineering 2020, 22: 1-27. PMID: 32169002, PMCID: PMC9351438, DOI: 10.1146/annurev-bioeng-060418-052147.Peer-Reviewed Original Research