2021
Visual comprehension and orientation into the COVID-19 CIDO ontology
Zheng L, Perl Y, He Y, Ochs C, Geller J, Liu H, Keloth V. Visual comprehension and orientation into the COVID-19 CIDO ontology. Journal Of Biomedical Informatics 2021, 120: 103861. PMID: 34224898, PMCID: PMC8252699, DOI: 10.1016/j.jbi.2021.103861.Peer-Reviewed Original ResearchConceptsPartial-area taxonomyCoronavirus Infectious Disease OntologyCompact viewMedium sized ontologiesNames of nodesVisual patternsInfectious Disease OntologySummarization networkOntologyUsersVisual comprehensionDisease OntologyVisualizationNodesTaxonomyLayoutSummarizationGranularityNetworkCIDOConceptViews
2020
Outlier concepts auditing methodology for a large family of biomedical ontologies
Zheng L, Min H, Chen Y, Keloth V, Geller J, Perl Y, Hripcsak G. Outlier concepts auditing methodology for a large family of biomedical ontologies. BMC Medical Informatics And Decision Making 2020, 20: 296. PMID: 33319713, PMCID: PMC7737254, DOI: 10.1186/s12911-020-01311-x.Peer-Reviewed Original ResearchConceptsFamily of ontologiesSummarization networkMeta-ontologyQA techniquesPartial-area taxonomySets of conceptsSpecimen hierarchyScalabilityQA frameworkOntology hierarchyOntologySummarizationNetworkBioPortal ontologiesAudit methodologyQuality assuranceHierarchyNCBOBig pictureCollection of familiesGene hierarchySNOMED
2018
Leveraging Horizontal Density Differences between Ontologies to Identify Missing Child Concepts: A Proof of Concept.
Keloth V, He Z, Chen Y, Geller J. Leveraging Horizontal Density Differences between Ontologies to Identify Missing Child Concepts: A Proof of Concept. AMIA Annual Symposium Proceedings 2018, 2018: 644-653. PMID: 30815106, PMCID: PMC6371323.Peer-Reviewed Original ResearchMeSH KeywordsAlgorithmsBiological OntologiesSystematized Nomenclature of MedicineUnified Medical Language SystemVocabulary, ControlledHow Sustainable are Biomedical Ontologies?
Geller J, Keloth V, Musen M. How Sustainable are Biomedical Ontologies? AMIA Annual Symposium Proceedings 2018, 2018: 470-479. PMID: 30815087, PMCID: PMC6371329.Peer-Reviewed Original Research