1999
Olfactory Receptor Database: a database of the largest eukaryotic gene family
Skoufos E, Healy M, Singer M, Nadkarni P, Miller P, Shepherd G. Olfactory Receptor Database: a database of the largest eukaryotic gene family. Nucleic Acids Research 1999, 27: 343-345. PMID: 9847223, PMCID: PMC148178, DOI: 10.1093/nar/27.1.343.Peer-Reviewed Original Research
1998
A metadata approach to query interoperation between molecular biology databases.
Cheung KH, Nadkarni PM, Shin DG. A metadata approach to query interoperation between molecular biology databases. Bioinformatics 1998, 14: 486-497. PMID: 9694987, DOI: 10.1093/bioinformatics/14.6.486.Peer-Reviewed Original ResearchMeSH KeywordsChromosome MappingComputational BiologyComputer SimulationDatabase Management SystemsDatabases, FactualMolecular BiologyConceptsMolecular biology databasesDatabase objectsBiology databasesSpecification of correspondencesDatabase accessHeterogeneous databasesSQL queriesDatabase interoperationMetadata approachSuch metadataPrototype systemIndividual databasesInteroperationMap databaseMetadataDatabaseGreat challengeObjectsQueriesUsersValue modelDatabase comparisonRequestsSpecificationComplexity
1997
Mapdiff: determining differences between two genomic maps
Nadkarni P. Mapdiff: determining differences between two genomic maps. Bioinformatics 1997, 13: 217-225. PMID: 9183523, DOI: 10.1093/bioinformatics/13.3.217.Peer-Reviewed Original Research
1996
CONTIG EXPLORER: Interactive Marker-Content Map Assembly
Nadkarni P, Banks A, Montgomery K, LeBlanc-Stracewski J, Miller P, Krauter K. CONTIG EXPLORER: Interactive Marker-Content Map Assembly. Genomics 1996, 31: 301-310. PMID: 8838311, DOI: 10.1006/geno.1996.0052.Peer-Reviewed Original ResearchDNA Workbench: A Database Package to Manage Regional Physical Mapping
Nadkarni P, Cheung K, Castiglione C, Miller P, Kidd K. DNA Workbench: A Database Package to Manage Regional Physical Mapping. Journal Of Computational Biology 1996, 3: 319-329. PMID: 8811490, DOI: 10.1089/cmb.1996.3.319.Peer-Reviewed Original Research
1995
Management of Evolving Map Data: Data Structures and Algorithms Based on the Framework Map
Nadkarni P. Management of Evolving Map Data: Data Structures and Algorithms Based on the Framework Map. Genomics 1995, 30: 565-573. PMID: 8825644, DOI: 10.1006/geno.1995.1278.Peer-Reviewed Original ResearchConceptsData structureMap maintenanceClient-server databaseRelational databaseAmount of informationGenomic objectsAlgorithm BasedMap dataAlgorithmConsensus framework mapUseful mapsGenome CenterDatabaseObjectsQueriesMapsPutative orderBasedMapping effortsInformationFramework mapDataApplicationsOrderHeterogeneous methodologiesInternet-based Support for Bioscience Research: A Collaborative Genome center for Human Chromosome 12
Miller P, Nadkarni P, Kidd K, Cheung K, Ward D, Banks A, Bray-Ward P, Cupelli L, Herdman V, Marondel I, Montcomery K, Renault B, Yoon S, Krauter K, Kucherlapati R. Internet-based Support for Bioscience Research: A Collaborative Genome center for Human Chromosome 12. Journal Of The American Medical Informatics Association 1995, 2: 351-364. PMID: 8581551, PMCID: PMC116278, DOI: 10.1136/jamia.1995.96157828.Peer-Reviewed Original ResearchMeSH KeywordsChromosome MappingChromosomes, Artificial, YeastChromosomes, Human, Pair 12Computer Communication NetworksConnecticutData DisplayDatabases, FactualGenetic MarkersGenome, HumanHumansInterinstitutional RelationsLocal Area NetworksModels, GeneticNew York CityOrganizational ObjectivesSoftware DesignSystems IntegrationUser-Computer InterfaceConceptsUser-friendly front endInternet-based supportExternal databasesMedical informaticsGenome CenterGenome informaticsDatabase programMapping communityCandidate mapsInformaticsAssembly toolsAreas of bioscienceFront endDatabaseServerSybaseSuch supportCase studySetToolBioscience researchCertain issuesClientsTechnologySupportCEPH viewer: a client-server database to browse and manipulate CEPH physical mapping and linkage data
Nadkarni P, Bray-Ward P. CEPH viewer: a client-server database to browse and manipulate CEPH physical mapping and linkage data. Genomics 1995, 25: 318-320. PMID: 7774941, DOI: 10.1016/0888-7543(95)80147-e.Peer-Reviewed Original ResearchNetwork-based informatics support of research collaborations in the Human Genome Project and the Human Brain Project.
Miller P, Nadkarni P, Kucherlapati R, Krauter K, Kidd K, Ward D, Shepherd G, Berkowicz D. Network-based informatics support of research collaborations in the Human Genome Project and the Human Brain Project. Medinfo. 1995, 8 Pt 2: 1541-4. PMID: 8591495.Peer-Reviewed Original Research
1992
CHROMINFO: a database for viewing and editing top-level chromosome data.
Nadkarni P, Reeders S, Shifman M, Miller P. CHROMINFO: a database for viewing and editing top-level chromosome data. AMIA Annual Symposium Proceedings 1992, 366-70. PMID: 1482899, PMCID: PMC2248058.Peer-Reviewed Original Research
1991
Parallelizing genetic linkage analysis: A case study for applying parallel computation in molecular biology
Miller P, Nadkarni P, Gelernter J, Carriero N, Pakstis A, Kidd K. Parallelizing genetic linkage analysis: A case study for applying parallel computation in molecular biology. Journal Of Biomedical Informatics 1991, 24: 234-248. PMID: 1868693, DOI: 10.1016/0010-4809(91)90046-y.Peer-Reviewed Original ResearchMeSH KeywordsChromosome MappingForecastingGenetic LinkageLod ScoreMolecular BiologyProgramming LanguagesSoftwareSoftware DesignConceptsParallel computersSequential programsMachine-independent parallel programming languageParallel programming languageDifferent parallel machinesLengthy computation timeParallel programsProgramming languageAvailable processorsDifferent processorsParallel computationParallel machinesSequential versionParallel versionComputational loadComputation timePerformance benchmarksComputerProcessorsCase studyDifferent piecesIterative programsLINKMAPComputationParallel forms