2019
Machine Learning in Relation to Emergency Medicine Clinical and Operational Scenarios: An Overview
Lee S, Mohr N, Street W, Nadkarni P. Machine Learning in Relation to Emergency Medicine Clinical and Operational Scenarios: An Overview. Western Journal Of Emergency Medicine 2019, 20: 219-227. PMID: 30881539, PMCID: PMC6404711, DOI: 10.5811/westjem.2019.1.41244.Peer-Reviewed Original ResearchConceptsNatural language processingHealth informaticsMachine-learning algorithmsHealth informatics toolsArtificial intelligenceMachine learningLanguage processingVital technologyInformaticsInformatics toolsEmergency careOperational scenariosEmergency medicineCurrent stateHealthcare providersClinical useHealthcare settingsIntelligencePractice changeMachineAlgorithmToolEM cliniciansPowerful toolProminent development
2013
Natural language processing: algorithms and tools to extract computable information from EHRs and from the biomedical literature
Ohno-Machado L, Nadkarni P, Johnson K. Natural language processing: algorithms and tools to extract computable information from EHRs and from the biomedical literature. Journal Of The American Medical Informatics Association 2013, 20: 805-805. PMID: 23935077, PMCID: PMC3756279, DOI: 10.1136/amiajnl-2013-002214.Commentaries, Editorials and Letters
2011
Data standards for clinical research data collection forms: current status and challenges
Richesson R, Nadkarni P. Data standards for clinical research data collection forms: current status and challenges. Journal Of The American Medical Informatics Association 2011, 18: 341-346. PMID: 21486890, PMCID: PMC3078665, DOI: 10.1136/amiajnl-2011-000107.Peer-Reviewed Original ResearchConceptsClinical Research InformaticsStandards adoptionWorkflow supportStructured data collectionData itemsResearch informaticsData standardsTool requirementsStandards effortsSuch toolsTerminological standardsResearch data collectionClinical research applicationsContent standardsData collectionInteroperabilityCase report formsResearch applicationsAdoptionInformaticsResearch activitiesRetrievalToolFormal relationshipReuse
2005
Metadata-driven Delphi rating on the Internet
Deshpande AM, Shiffman RN, Nadkarni PM. Metadata-driven Delphi rating on the Internet. Computer Methods And Programs In Biomedicine 2005, 77: 49-56. PMID: 15639709, DOI: 10.1016/j.cmpb.2004.05.006.Peer-Reviewed Original ResearchConceptsDelphi ratingPaper-based data collectionTraditional paper-based methodsReusable softwarePaper-based methodsProgramming codeData entrySoftwareAnalysis toolsMetadataComputerized techniqueData collectionValues schemaInternetSchemaFive-level Likert scaleWebCodeDisagreement indexGuideline StandardizationExpertsToolMethodCostCollection
2004
VitaPad: visualization tools for the analysis of pathway data
Holford M, Li N, Nadkarni P, Zhao H. VitaPad: visualization tools for the analysis of pathway data. Bioinformatics 2004, 21: 1596-1602. PMID: 15564306, DOI: 10.1093/bioinformatics/bti153.Peer-Reviewed Original ResearchConceptsCross-platform applicationHigh-resolution graphicsGraph layout algorithmsBiological pathway diagramsPathway diagramsXML formatUser interfaceLayout algorithmVisualization toolsIntuitive controlEasy extensionPathway dataGraphicsUsersMicroarray dataAlgorithmSoftwareToolFormatDataHongyuInterfaceIntegrationPackageApplications
2001
Easing the transition between attribute-value databases and conventional databases for scientific data.
Nadkarni P, Marenco L. Easing the transition between attribute-value databases and conventional databases for scientific data. AMIA Annual Symposium Proceedings 2001, 483-7. PMID: 11825235, PMCID: PMC2243470.Peer-Reviewed Original ResearchConceptsEAV/CRData transfer toolsData transfer programProgrammer interventionConventional databasesLegacy systemsDB technologyDevelopment frameworkGeneric toolData sourcesDifferent representationsConventional dataAnalytical packageDatabaseScientific dataTransfer toolsScientific databasesTransfer taskToolProgrammingTaskCurrent limitationsWide varietyTechnologyFramework
1999
Olfactory Receptor Database: a database of the largest eukaryotic gene family
Skoufos E, Healy M, Singer M, Nadkarni P, Miller P, Shepherd G. Olfactory Receptor Database: a database of the largest eukaryotic gene family. Nucleic Acids Research 1999, 27: 343-345. PMID: 9847223, PMCID: PMC148178, DOI: 10.1093/nar/27.1.343.Peer-Reviewed Original Research
1998
The Human Brain Project: neuroinformatics tools for integrating, searching and modeling multidisciplinary neuroscience data
Shepherd G, Mirsky J, Healy M, Singer M, Skoufos E, Hines M, Nadkarni P, Miller P. The Human Brain Project: neuroinformatics tools for integrating, searching and modeling multidisciplinary neuroscience data. Trends In Neurosciences 1998, 21: 460-468. PMID: 9829685, DOI: 10.1016/s0166-2236(98)01300-9.Peer-Reviewed Original ResearchDatabase tools for integrating and searching membrane property data correlated with neuronal morphology
Mirsky J, Nadkarni P, Healy M, Miller P, Shepherd G. Database tools for integrating and searching membrane property data correlated with neuronal morphology. Journal Of Neuroscience Methods 1998, 82: 105-121. PMID: 10223520, DOI: 10.1016/s0165-0270(98)00049-1.Peer-Reviewed Original ResearchConceptsDatabase toolsWeb resourcesSearch toolsCritical problemUsersSequence databasesSimple canonical modelFunctional operationDatabaseToolSearchDifferent neuronsInternetAnnotationEquivalent compartmentsModelersDataProperty dataCanonical modelDifferent typesInformationState of acceptanceResourcesVehiclesProperty space
1995
Internet-based Support for Bioscience Research: A Collaborative Genome center for Human Chromosome 12
Miller P, Nadkarni P, Kidd K, Cheung K, Ward D, Banks A, Bray-Ward P, Cupelli L, Herdman V, Marondel I, Montcomery K, Renault B, Yoon S, Krauter K, Kucherlapati R. Internet-based Support for Bioscience Research: A Collaborative Genome center for Human Chromosome 12. Journal Of The American Medical Informatics Association 1995, 2: 351-364. PMID: 8581551, PMCID: PMC116278, DOI: 10.1136/jamia.1995.96157828.Peer-Reviewed Original ResearchMeSH KeywordsChromosome MappingChromosomes, Artificial, YeastChromosomes, Human, Pair 12Computer Communication NetworksConnecticutData DisplayDatabases, FactualGenetic MarkersGenome, HumanHumansInterinstitutional RelationsLocal Area NetworksModels, GeneticNew York CityOrganizational ObjectivesSoftware DesignSystems IntegrationUser-Computer InterfaceConceptsUser-friendly front endInternet-based supportExternal databasesMedical informaticsGenome CenterGenome informaticsDatabase programMapping communityCandidate mapsInformaticsAssembly toolsAreas of bioscienceFront endDatabaseServerSybaseSuch supportCase studySetToolBioscience researchCertain issuesClientsTechnologySupport