2004
QIS: A Framework for Biomedical Database Federation
Marenco L, Wang TY, Shepherd G, Miller PL, Nadkarni P. QIS: A Framework for Biomedical Database Federation. Journal Of The American Medical Informatics Association 2004, 11: 523-534. PMID: 15298995, PMCID: PMC524633, DOI: 10.1197/jamia.m1506.Peer-Reviewed Original ResearchConceptsNetwork-based serversHeterogeneous data sourcesRobust data integrationIntegration serverOntology serverDatabase federationsSource serverNeuroscience databasesData integrationMediator frameworkServerData elementsQueriesData sourcesMetadataPrototype stageStandard technologyIntegrator systemGenomic databasesFrameworkDatabaseOntologyArchitectureSchemaTechnological expertise
2003
Achieving Evolvable Web-Database Bioscience Applications Using the EAV/CR Framework: Recent Advances
Marenco L, Tosches N, Crasto C, Shepherd G, Miller PL, Nadkarni PM. Achieving Evolvable Web-Database Bioscience Applications Using the EAV/CR Framework: Recent Advances. Journal Of The American Medical Informatics Association 2003, 10: 444-453. PMID: 12807806, PMCID: PMC212781, DOI: 10.1197/jamia.m1303.Peer-Reviewed Original ResearchConceptsEAV/CRXML-based protocolHuman Brain ProjectDatabase supportData querySemantic descriptorsAutomatic generationNeuroscience databasesCR frameworkScientific domainsBrain ProjectInterclass relationshipsSchema maintenanceFrameworkBioscience applicationsResearch focusQueriesMetadataDatabaseUMLSUsersData extractionDifferent subsetsSchemaParticular research focus
2001
Easing the transition between attribute-value databases and conventional databases for scientific data.
Nadkarni P, Marenco L. Easing the transition between attribute-value databases and conventional databases for scientific data. AMIA Annual Symposium Proceedings 2001, 483-7. PMID: 11825235, PMCID: PMC2243470.Peer-Reviewed Original ResearchConceptsEAV/CRData transfer toolsData transfer programProgrammer interventionConventional databasesLegacy systemsDB technologyDevelopment frameworkGeneric toolData sourcesDifferent representationsConventional dataAnalytical packageDatabaseScientific dataTransfer toolsScientific databasesTransfer taskToolProgrammingTaskCurrent limitationsWide varietyTechnologyFramework
2000
WebEAV
Nadkarni P, Brandt C, Marenco L. WebEAV. Journal Of The American Medical Informatics Association 2000, 7: 343-356. PMID: 10887163, PMCID: PMC61439, DOI: 10.1136/jamia.2000.0070343.Peer-Reviewed Original ResearchConceptsWeb development environmentWeb application developmentUser interface issuesClient-server technologyValue databaseWeb technologiesApplication developmentEntity attributesWeb developmentDevelopment environmentWeb interfaceGeneric frameworkInterface issuesComplex systemsFront endDatabaseTechnologyMetadataDevelopersSuitable examplesArchitectureTaskFeaturesFrameworkVehicles
1999
Neuronal database integration: the Senselab EAV data model.
Marenco L, Nadkarni P, Skoufos E, Shepherd G, Miller P. Neuronal database integration: the Senselab EAV data model. AMIA Annual Symposium Proceedings 1999, 102-6. PMID: 10566329, PMCID: PMC2232788.Peer-Reviewed Original Research
1995
SQLGEN: A framework for rapid client-server database application development
Nadkarni P, Cheung K. SQLGEN: A framework for rapid client-server database application development. Journal Of Biomedical Informatics 1995, 28: 479-499. DOI: 10.1006/cbmr.1995.1030.Peer-Reviewed Original ResearchDatabase application developmentStructured query languageApplication developmentCommon database operationsClient-server modeRapid application prototypingClient machineQuery languageDatabase operationsDatabase serverServer dataUser actionsApplication prototypingAccess rightsData dictionaryMicrocomputer databaseMetadataRelational formsClientsBiomedical databasesModest effortDictionaryServerFrameworkDatabaseSQLGEN: a framework for rapid client-server database application development.
Nadkarni P, Cheung K. SQLGEN: a framework for rapid client-server database application development. Journal Of Biomedical Informatics 1995, 28: 479-99. PMID: 8770535, DOI: 10.1016/s0010-4809(85)71030-0.Peer-Reviewed Original ResearchConceptsDatabase application developmentStructured query languageApplication developmentCommon database operationsClient-server modeRapid application prototypingClient machineQuery languageDatabase operationsDatabase serverServer dataUser actionsApplication prototypingAccess rightsData dictionaryMicrocomputer databaseMetadataRelational formsClientsBiomedical databasesModest effortDictionaryServerFrameworkDatabase