2024
REliable PIcking by Consensus (REPIC): a consensus methodology for harnessing multiple cryo-EM particle pickers
Cameron C, Seager S, Sigworth F, Tagare H, Gerstein M. REliable PIcking by Consensus (REPIC): a consensus methodology for harnessing multiple cryo-EM particle pickers. Communications Biology 2024, 7: 1421. PMID: 39482410, PMCID: PMC11528043, DOI: 10.1038/s42003-024-07045-0.Peer-Reviewed Original ResearchConceptsCryo-EM usersParticle identificationParticle pickingLow signal-to-noise ratioAchievable resolutionSignal-to-noise ratioState-of-the-art computational algorithmsInteger linear programmingParticle setManual interventionHigh-quality particlesGraph problemsParticle locationMultiple pickersParticlesConstrained alternating minimization for parameter mapping (CAMP)
Elsaid N, Dispenza N, Hu C, Peters D, Constable R, Tagare H, Galiana G. Constrained alternating minimization for parameter mapping (CAMP). Magnetic Resonance Imaging 2024, 110: 176-183. PMID: 38657714, PMCID: PMC11193090, DOI: 10.1016/j.mri.2024.04.029.Peer-Reviewed Original ResearchConceptsAlternating minimizationAccelerated parameter mappingImage qualityReconstructed image qualityEfficient reconstruction algorithmSacrificing model accuracyParameter mapsPhantom studyK-space samplingAcceleration datasetsK-spaceUndersampling artifactsCartesian acquisitionConsecutive imagesReconstruction algorithmIndividual imagesModel cost functionExponential decayEcho timeReconstruction methodCost functionReduce artifactsPhantomScan timeObjective function
2008
Fast, Adaptive Expectation-Maximization Alignment for Cryo-EM
Tagare HD, Sigworth F, Barthel A. Fast, Adaptive Expectation-Maximization Alignment for Cryo-EM. Lecture Notes In Computer Science 2008, 11: 855-862. PMID: 18982685, DOI: 10.1007/978-3-540-85990-1_103.Peer-Reviewed Original ResearchEvaluation of a Cardiac Ultrasound Segmentation Algorithm Using a Phantom
Yue Y, Tagare HD, Madsen EL, Frank GR, Hobson MA. Evaluation of a Cardiac Ultrasound Segmentation Algorithm Using a Phantom. Lecture Notes In Computer Science 2008, 11: 101-109. PMID: 18979737, PMCID: PMC2840385, DOI: 10.1007/978-3-540-85988-8_13.Peer-Reviewed Original Research