Multiscale geometric and topological analyses for characterizing and predicting immune responses from single cell data
Venkat A, Bhaskar D, Krishnaswamy S. Multiscale geometric and topological analyses for characterizing and predicting immune responses from single cell data. Trends In Immunology 2023, 44: 551-563. PMID: 37301677, DOI: 10.1016/j.it.2023.05.003.Peer-Reviewed Original ResearchAnalyzing collective motion with machine learning and topology
Bhaskar D, Manhart A, Milzman J, Nardini JT, Storey KM, Topaz CM, Ziegelmeier L. Analyzing collective motion with machine learning and topology. Chaos An Interdisciplinary Journal Of Nonlinear Science 2019, 29: 123125. PMID: 31893635, PMCID: PMC7027427, DOI: 10.1063/1.5125493.Peer-Reviewed Original ResearchSupervised machine learning methodsMachine learning methodsTopological data analysisCollective motionMachine learningLearning methodsOrder parameterSimulation dataTopological approachPersistent homologyTraditional order parametersPrior knowledgeMachineCollective behaviorModel parametersData analysisLarge librariesNumerical simulationsTopologyMultiple scalesMotionTime seriesLearningDifferent typesParameters