2023
Predictive overfitting in immunological applications: Pitfalls and solutions
Gygi J, Kleinstein S, Guan L. Predictive overfitting in immunological applications: Pitfalls and solutions. Human Vaccines & Immunotherapeutics 2023, 19: 2251830. PMID: 37697867, PMCID: PMC10498807, DOI: 10.1080/21645515.2023.2251830.Peer-Reviewed Original Research
2011
Biomedical Model Fitting and Error Analysis
Costa KD, Kleinstein SH, Hershberg U. Biomedical Model Fitting and Error Analysis. Science Signaling 2011, 4: tr9. PMID: 21954296, PMCID: PMC3272496, DOI: 10.1126/scisignal.2001983.Peer-Reviewed Original ResearchConceptsMathematical modelAppropriate mathematical modelModel parametersError analysisFit parameter valuesLinearization schemeNonlinear modelGoodness of fitNonlinear dataModel fittingBest fitParameter valuesInverse modelingComputational methodsParticular applicationSuch constantsExperimental dataFittingBiomedical systemsProblemFitModelParametersConstantsSeries of measurements
2001
Toward Quantitative Simulation of Germinal Center Dynamics: Biological and Modeling Insights from Experimental Validation
KLEINSTEIN S, SINGH J. Toward Quantitative Simulation of Germinal Center Dynamics: Biological and Modeling Insights from Experimental Validation. Journal Of Theoretical Biology 2001, 211: 253-275. PMID: 11444956, DOI: 10.1006/jtbi.2001.2344.Peer-Reviewed Original ResearchConceptsCenter dynamicsParticular mathematical modelOrdinary differential equationsGerminal center dynamicsImmune system dynamicsDifferential equationsExperimental dataMathematical modelStochastic frameworkAverage dynamicsSpecific experimental dataDeterministic modelSystem dynamicsModel parametersPossible extensionsGeneral methodologyQuantitative simulationOpreaNew implementationDynamicsModeling insightsPerelsonCenter behaviorEquationsExperimental validation