2021
Genomics analysis of hexanoic acid exposure in Drosophila species
Drum Z, Lanno S, Gregory S, Shimshak S, Ahamed M, Barr W, Bekele B, Biester A, Castro C, Connolly L, DelGaudio N, Humphrey W, Karimi H, Karolczak S, Lawrence T, McCracken A, Miller-Medzon N, Murphy L, Park C, Park S, Qiu C, Serra K, Snyder G, Strauss A, Tang S, Vyzas C, Coolon J. Genomics analysis of hexanoic acid exposure in Drosophila species. G3: Genes, Genomes, Genetics 2021, 12: jkab354. PMID: 34718544, PMCID: PMC8727985, DOI: 10.1093/g3journal/jkab354.Peer-Reviewed Original ResearchConceptsD. sechelliaDrosophila sechelliaSets of differentially expressed genesSpecialist D. sechelliaFruit of Morinda citrifoliaDifferentially expressed genesAcid resistanceHexanoic acidM. citrifolia fruitDrosophila speciesD. melanogasterGeneralist speciesGenomic analysisFruit of M. citrifoliaCandidate genesDietary specialistsDietary specializationTranscriptional responseEcological communitiesTrophic interactionsHost plantsGenetic basisRNA sequencingDownregulated genesGene expression
2017
Transcriptomic Analysis of Octanoic Acid Response in Drosophila sechellia Using RNA-Sequencing
Lanno S, Gregory S, Shimshak S, Alverson M, Chiu K, Feil A, Findley M, Forman T, Gordon J, Ho J, Krupp J, Lam I, Lane J, Linde S, Morse A, Rusk S, Ryan R, Saniee A, Sheth R, Siranosian J, Sirichantaropart L, Sternlieb S, Zaccardi C, Coolon J. Transcriptomic Analysis of Octanoic Acid Response in Drosophila sechellia Using RNA-Sequencing. G3: Genes, Genomes, Genetics 2017, 7: 3867-3873. PMID: 29021218, PMCID: PMC5714484, DOI: 10.1534/g3.117.300297.Peer-Reviewed Original ResearchConceptsQuantitative trait lociOA resistanceGene expression analysisGene OntologyResistance genesRNA sequencingRNA interferenceExpression analysisConsistent with previous functional studiesFunctional studiesGene family membersAnnotated orthologsDrosophila sechelliaEffect lociRNA-seqLevels of octanoic acidTrait lociCuticle developmentDefense responsesExpressed genesToxic fruitsTranscriptome analysisDownregulated genesUpregulated genesGenes