2024
Identifying signs and symptoms of urinary tract infection from emergency department clinical notes using large language models
Iscoe M, Socrates V, Gilson A, Chi L, Li H, Huang T, Kearns T, Perkins R, Khandjian L, Taylor R. Identifying signs and symptoms of urinary tract infection from emergency department clinical notes using large language models. Academic Emergency Medicine 2024, 31: 599-610. PMID: 38567658, DOI: 10.1111/acem.14883.Peer-Reviewed Original ResearchElectronic health recordsNatural language processingNatural language processing modelsEmergency departmentTransformer-based modelsClinical notesF1-measureClinical decision supportLanguage modelSpaCy modelsU.S. health systemElements of natural language processingPublic health surveillanceConvolutional neural network-based modelProcessing long documentsIdentification of symptomsHealth recordsHealth systemClinician notesNeural network-based modelMedical careHealth surveillanceSymptom identificationEntity recognitionNetwork-based modelIdentifying incarceration status in the electronic health record using large language models in emergency department settings
Huang T, Socrates V, Gilson A, Safranek C, Chi L, Wang E, Puglisi L, Brandt C, Taylor R, Wang K. Identifying incarceration status in the electronic health record using large language models in emergency department settings. Journal Of Clinical And Translational Science 2024, 8: e53. PMID: 38544748, PMCID: PMC10966832, DOI: 10.1017/cts.2024.496.Peer-Reviewed Original ResearchElectronic health recordsNatural language processingHealth recordsIncarceration statusSignificant social determinant of healthSocial determinants of healthClinic electronic health recordsEHR databasePopulation health initiativesDeterminants of healthMitigate health disparitiesRacial health inequitiesEmergency department settingICD-10 codesHealth inequalitiesNatural language processing modelsHealth disparitiesHealth initiativesDepartment settingEmergency departmentSystem interventionsICD-10Clinical notesStudy populationLanguage model
2022
Neural Natural Language Processing for unstructured data in electronic health records: A review
Li I, Pan J, Goldwasser J, Verma N, Wong W, Nuzumlalı M, Rosand B, Li Y, Zhang M, Chang D, Taylor R, Krumholz H, Radev D. Neural Natural Language Processing for unstructured data in electronic health records: A review. Computer Science Review 2022, 46: 100511. DOI: 10.1016/j.cosrev.2022.100511.Peer-Reviewed Original ResearchNatural language processingElectronic health recordsLanguage processingDeep learning approachHealth recordsRule-based systemNew neural networkVariety of tasksUnstructured dataUnstructured textKnowledge graphEHR applicationsDigital collectionsNeural networkNLP methodsLearning approachWord embeddingsSurvey paperSecondary useMedical dialogueHealthcare eventsTaskProcessingMultilingualityInterpretability