2024
Microbe Profile: Bacteriophage ϕ6: a model for segmented RNA viruses and the evolutionary consequences of viral ‘sex’
Turner P, Chao L. Microbe Profile: Bacteriophage ϕ6: a model for segmented RNA viruses and the evolutionary consequences of viral ‘sex’. Microbiology 2024, 170: 001467. PMID: 39046321, PMCID: PMC11316545, DOI: 10.1099/mic.0.001467.Peer-Reviewed Original ResearchMeSH KeywordsBacteriophage phi 6Evolution, MolecularHost-Pathogen InteractionsMutationRNA VirusesVirus ReplicationConceptsEukaryotic virusesHost-pathogen interactionsEvolution of sexDsRNA virusesEvolutionary consequencesSegment reassortmentBacterial virusesRNA virusesRate of adaptationMutation ratePhenotypic complexityMutation loadLipid envelopeBacteriophageReassortmentRNAMutationsVirusMolecular modelingDsRNAExperimental systemGeneticsTraitsHostReplicationExperimental Evolution Studies in Φ6 Cystovirus
Singhal S, Balitactac A, Nayagam A, Bahrami P, Nayeem S, Turner P. Experimental Evolution Studies in Φ6 Cystovirus. Viruses 2024, 16: 977. PMID: 38932268, PMCID: PMC11209170, DOI: 10.3390/v16060977.Peer-Reviewed Original ResearchMeSH KeywordsBacteriophage phi 6Biological EvolutionCystoviridaeDirected Molecular EvolutionEvolution, MolecularGenome, ViralHost SpecificityHumansMutationConceptsExperimental evolution studiesFitness effects of spontaneous mutationsSpontaneous mutationsEffects of spontaneous mutationsEvolution of RNA virusesEvolution studiesEvolution of host rangeFast generation timesResponse to selectionMultiple phagesNon-pathogenic modelRNA genomeConsequence of evolutionOuter membraneHost rangeRNA virusesNovel traitsMutation rateHost cellsFitness effectsPopulation sizeMutationsCystovirusesBacteriophageGeneration time
2016
Reassortment in segmented RNA viruses: mechanisms and outcomes
McDonald SM, Nelson MI, Turner PE, Patton JT. Reassortment in segmented RNA viruses: mechanisms and outcomes. Nature Reviews Microbiology 2016, 14: 448-460. PMID: 27211789, PMCID: PMC5119462, DOI: 10.1038/nrmicro.2016.46.Peer-Reviewed Original ResearchConceptsRNA virusesGenome segmentsProtein-RNA interactionsMultiple selection pressuresRNA-RNA interactionsSingle host cellSegmented RNA virusViral fitnessDifferent gene segmentsProtein setsSelection pressureHost cellsGene segmentsGeneration of reassortantsImportant pathogenReassortmentDifferent viral strainsReassortant virusesFitnessImmune recognitionHybrid virionsReassortantsVirusMore virusesPlantsGeneralized selection to overcome innate immunity selects for host breadth in an RNA virus
Wasik BR, Muñoz‐Rojas A, Okamoto KW, Miller‐Jensen K, Turner PE. Generalized selection to overcome innate immunity selects for host breadth in an RNA virus. Evolution 2016, 70: 270-281. PMID: 26882316, DOI: 10.1111/evo.12845.Peer-Reviewed Original ResearchMeSH KeywordsAnimalsDogsEvolution, MolecularHeLa CellsHost SpecificityHumansImmunity, InnateMadin Darby Canine Kidney CellsSelection, GeneticVesiculovirusConceptsVesicular stomatitis virus populationsInnate immunityRNA virusesHost cell levelVirus-host coevolutionDifferent species originViral fitnessCompetent cellsVSV populationsHost breadthHuman cancer cellsEvolutionary historyFitness differencesHost speciesDisparate hostsSpecies originInfection successInnate immune capacityPrimate cellsInnate immune functionVirus populationsImmune deficient cellsEmergence potentialImmune competent cellsNonhuman primate cells
2014
Antibiotic resistance correlates with transmission in plasmid evolution
Turner PE, Williams ES, Okeke C, Cooper VS, Duffy S, Wertz JE. Antibiotic resistance correlates with transmission in plasmid evolution. Evolution 2014, 68: 3368-3380. PMID: 25351426, DOI: 10.1111/evo.12537.Peer-Reviewed Original ResearchConceptsCarbon source utilizationPreliminary sequence analysisAntibiotic resistance correlatesFitness assaysQuantitative traitsSelection pressureBacterial hostsResistance levelsPhenotypic performancePlasmid-bearing cellsGenetic rearrangementsTransfer operonSequence analysisPlasmid evolutionPlasmid conjugationCommon competitorPhenotypic correlationsShufflon regionTetracycline resistance transposonAutonomous replicatorPlasmidHorizontal transmissionDivergencePlasmid resistancePlasmid lineages
2013
STOCHASTIC TEMPERATURES IMPEDE RNA VIRUS ADAPTATION
Alto BW, Wasik BR, Morales NM, Turner PE. STOCHASTIC TEMPERATURES IMPEDE RNA VIRUS ADAPTATION. Evolution 2013, 67: 969-979. PMID: 23550749, DOI: 10.1111/evo.12034.Peer-Reviewed Original ResearchConceptsFitness gainsVesicular stomatitis virusEvolution of generalistsConvergent molecular evolutionEvolution of specializationCell-binding proteinsMolecular evolutionGenome substitutionsConstant environmentVirus adaptationSequence analysisRNA virusesG geneVirus populationsStomatitis virusMolecular changesLineagesGeneralistsTemperature treatmentKey roleEvolutionGenesLociVirusProtein
2010
ROLE OF EVOLVED HOST BREADTH IN THE INITIAL EMERGENCE OF AN RNA VIRUS
Turner PE, Morales NM, Alto BW, Remold SK. ROLE OF EVOLVED HOST BREADTH IN THE INITIAL EMERGENCE OF AN RNA VIRUS. Evolution 2010, 64: 3273-3286. PMID: 20633045, DOI: 10.1111/j.1558-5646.2010.01051.x.Peer-Reviewed Original ResearchConceptsHost breadthNew hostHost growthPathogen emergenceDirect selectionVesicular stomatitis virus populationsType of selectionHost shiftsPhenotypic plasticityNiche breadthSpecialist virusesHost colonizationIndirect selectionDifferent hostsPopulation varianceRNA virusesPathogen infectiousnessGeneralistsVirus populationsHostEnvironmental robustnessFortuitous changesPopulation growthGrowthVirus
2008
Robustness promotes evolvability of thermotolerance in an RNA virus
McBride RC, Ogbunugafor CB, Turner PE. Robustness promotes evolvability of thermotolerance in an RNA virus. BMC Ecology And Evolution 2008, 8: 231. PMID: 18694497, PMCID: PMC2518931, DOI: 10.1186/1471-2148-8-231.Peer-Reviewed Original ResearchConceptsGenetic robustnessEfficacy of selectionNew habitatsEvolutionary biologyVirus adaptabilityLaboratory populationsMutational changesNew nichesEvolvabilityRNA virusesFace of perturbationsGreater toleranceThermotoleranceRobust clonesNovel environmentClonesBiological systemsBalance of robustnessFuture adaptationUnderlying mechanismHabitatsNicheBiologyGreater resistancePopulationEvolutionary Genomics of Host Adaptation in Vesicular Stomatitis Virus
Remold SK, Rambaut A, Turner PE. Evolutionary Genomics of Host Adaptation in Vesicular Stomatitis Virus. Molecular Biology And Evolution 2008, 25: 1138-1147. PMID: 18353798, DOI: 10.1093/molbev/msn059.Peer-Reviewed Original ResearchConceptsGenetic architectureComplex traitsHigher fitnessVirus populationsVesicular stomatitis virus populationsParallel phenotypic changesSimilar selection pressuresRNA virus populationsHigh mutation rateEvolutionary genomicsGenome evolutionHost useComplete consensus sequenceTrue pleiotropyHost adaptationAllele substitutionGenomic changesSelection pressureVesicular stomatitis virusConsensus sequenceMutation rateEcological historyPhenotypic changesRNA virusesHeLa cells
2005
Evolution of Mutational Robustness in an RNA Virus
Montville R, Froissart R, Remold SK, Tenaillon O, Turner PE. Evolution of Mutational Robustness in an RNA Virus. PLOS Biology 2005, 3: e381. PMID: 16248678, PMCID: PMC1275523, DOI: 10.1371/journal.pbio.0030381.Peer-Reviewed Original ResearchConceptsMutational robustnessRNA virusesAccurate genome replicationEvolution of robustnessUnderstanding of evolutionAdaptive evolutionGenetic robustnessPopulation bottleneckingPhenotypic constancyMutation accumulationNatural selectionGenetic variationMutational effectsGenome replicationHigh mutation frequencyMutational changesRandom mutationsMutation rateHost cellsBiological populationsFitness changesMutation frequencyGenomeComplementationVirus
2001
Transmission bottlenecks and the evolution of fitness in rapidly evolving RNA viruses
Elena S, Sanjuán R, Borderı́a A, Turner P. Transmission bottlenecks and the evolution of fitness in rapidly evolving RNA viruses. Infection Genetics And Evolution 2001, 1: 41-48. PMID: 12798049, DOI: 10.1016/s1567-1348(01)00006-5.Peer-Reviewed Original ResearchConceptsVesicular stomatitis virusRNA virusesEvolution of fitnessBasic genetic principlesNatural populationsGenetic driftEvolutionary importanceFitness lossCellular hostsTransmission bottleneckDeleterious mutationsHost individualsGenetic principlesBottleneck sizeViral adaptationViral fitnessStomatitis virusRandom accumulationSimilar bottlenecksTissue cultureMutationsFitnessProfound effectVirusMode of transmission
2000
The Two Faces of Mutation: Extinction and Adaptation in RNA Viruses
Elena S, Miralles R, Cuevas J, Turner P, Moya A. The Two Faces of Mutation: Extinction and Adaptation in RNA Viruses. IUBMB Life 2000, 49: 5-9. PMID: 10772334, DOI: 10.1080/713803585.Peer-Reviewed Original ResearchConceptsRNA virusesPopulation sizeGenetic variabilityDrastic fitness lossFace of mutationCellular DNA replicationHigh genetic variabilityEffects of mutationsLarge population sizesViral population sizeBottleneck eventsGenetic driftFitness lossDNA replicationFitness gainsSegment exchangeDifferent tissuesViral extinctionReplicative intermediatesInfected hostExtinctionMutationsPopulation standpointHostReplication