2023
Automated and manual segmentation of the hippocampus in human infants
Fel J, Ellis C, Turk-Browne N. Automated and manual segmentation of the hippocampus in human infants. Developmental Cognitive Neuroscience 2023, 60: 101203. PMID: 36791555, PMCID: PMC9957787, DOI: 10.1016/j.dcn.2023.101203.Peer-Reviewed Original ResearchConceptsManual segmentationHippocampal segmentationInter-rater reliabilityAutomated SegmentationSegmentation methodSegmentationAnatomical MRI scansEarly hippocampal developmentHead motionFreeSurfer softwareSoftwareHippocampal developmentMRI scansHippocampal structureAwake infantsInfantsHippocampusFMRI protocolAnatomical scansGold standardAdult templateHuman infantsScan qualityScansProtocol
2020
BrainIAK tutorials: User-friendly learning materials for advanced fMRI analysis
Kumar M, Ellis CT, Lu Q, Zhang H, Capotă M, Willke TL, Ramadge PJ, Turk-Browne NB, Norman KA. BrainIAK tutorials: User-friendly learning materials for advanced fMRI analysis. PLOS Computational Biology 2020, 16: e1007549. PMID: 31940340, PMCID: PMC6961866, DOI: 10.1371/journal.pcbi.1007549.Peer-Reviewed Original ResearchConceptsOpen-source Python software packageHigh-performance computing clusterNew programming languageOpen source softwareMachine-learning methodsPython software packageHigh-dimensional fMRI dataComputing clusterFile handlingMachine learningProgramming languageNovice usersDifferent softwareLarge memoryPython packageCustom codeSoftware packageSteep learning curveAdvanced toolsEfficient techniqueMarkov modelEvent segmentationReal-time fMRIAnalysis packageSoftware