2021
BrainIAK: The Brain Imaging Analysis Kit
Kumar M, Anderson M, Antony J, Baldassano C, Brooks P, Cai M, Chen P, Ellis C, Henselman-Petrusek G, Huberdeau D, Hutchinson J, Li Y, Lu Q, Manning J, Mennen A, Nastase S, Richard H, Schapiro A, Schuck N, Shvartsman M, Sundaram N, Suo D, Turek J, Turner D, Vo V, Wallace G, Wang Y, Williams J, Zhang H, Zhu X, Capotă M, Cohen J, Hasson U, Li K, Ramadge P, Turk-Browne N, Willke T, Norman K. BrainIAK: The Brain Imaging Analysis Kit. Aperture Neuro 2021, 1: 10.52294/31bb5b68-2184-411b-8c00-a1dacb61e1da. PMID: 35939268, PMCID: PMC9351935, DOI: 10.52294/31bb5b68-2184-411b-8c00-a1dacb61e1da.Peer-Reviewed Original ResearchHigh-performance compute clusterData analysis problemsCompute clustersData simulatorJupyter notebooksComputational innovationsPython packageSame codeReal dataAnalysis problemKey problemReal-time functional magnetic resonance imagingMarkov modelEvent segmentationAforementioned techniquesAnalysis techniquesSimilarity analysisSegmentationLaptopBayesian versionFunctional alignmentSimulatorTechniqueRepresentational similarity analysisVariety of techniques
2020
BrainIAK tutorials: User-friendly learning materials for advanced fMRI analysis
Kumar M, Ellis CT, Lu Q, Zhang H, Capotă M, Willke TL, Ramadge PJ, Turk-Browne NB, Norman KA. BrainIAK tutorials: User-friendly learning materials for advanced fMRI analysis. PLOS Computational Biology 2020, 16: e1007549. PMID: 31940340, PMCID: PMC6961866, DOI: 10.1371/journal.pcbi.1007549.Peer-Reviewed Original ResearchConceptsOpen-source Python software packageHigh-performance computing clusterNew programming languageOpen source softwareMachine-learning methodsPython software packageHigh-dimensional fMRI dataComputing clusterFile handlingMachine learningProgramming languageNovice usersDifferent softwareLarge memoryPython packageCustom codeSoftware packageSteep learning curveAdvanced toolsEfficient techniqueMarkov modelEvent segmentationReal-time fMRIAnalysis packageSoftware