2023
Application of Phylodynamic Tools to Inform the Public Health Response to COVID-19: Qualitative Analysis of Expert Opinions
Rich S, Richards V, Mavian C, Magalis B, Grubaugh N, Rasmussen S, Dellicour S, Vrancken B, Carrington C, Fisk-Hoffman R, Danso-Odei D, Chacreton D, Shapiro J, Seraphin M, Hepp C, Black A, Dennis A, Trovão N, Vandamme A, Rasmussen A, Lauzardo M, Dean N, Salemi M, Prosperi M. Application of Phylodynamic Tools to Inform the Public Health Response to COVID-19: Qualitative Analysis of Expert Opinions. JMIR Formative Research 2023, 7: e39409. PMID: 36848460, PMCID: PMC10131930, DOI: 10.2196/39409.Peer-Reviewed Original ResearchPublic health responsePublic health practitionersPublic health partnershipsHealth responseHealth practitionersCOVID-19Public healthSARS-CoV-2 genomic epidemiologyInfectious disease expertsSARS-CoV-2 pandemicHealth partnershipsFocus groupsPandemic responsePublic health professionalsVaccination eraPrecision public healthDisease expertsHealth professionalsEpidemiological investigationsInfectious diseasesMolecular epidemiologistsViral genomic dataFuture outbreaksCOVID-19 responseStrain emergence
2019
Precision epidemiology for infectious disease control
Ladner JT, Grubaugh ND, Pybus OG, Andersen KG. Precision epidemiology for infectious disease control. Nature Medicine 2019, 25: 206-211. PMID: 30728537, PMCID: PMC7095960, DOI: 10.1038/s41591-019-0345-2.Peer-Reviewed Original Research
2018
Tracking virus outbreaks in the twenty-first century
Grubaugh ND, Ladner JT, Lemey P, Pybus OG, Rambaut A, Holmes EC, Andersen KG. Tracking virus outbreaks in the twenty-first century. Nature Microbiology 2018, 4: 10-19. PMID: 30546099, PMCID: PMC6345516, DOI: 10.1038/s41564-018-0296-2.Peer-Reviewed Original ResearchConceptsWorld Health OrganizationInfectious disease epidemiologyEconomic burdenInfectious diseasesVirus sequencingSubstantial mortalityHealth OrganizationMajor epidemicsUnknown pathogensVirus outbreakDisease epidemiologyPotential causesOutbreak virusesDisease XInitial detectionVirusOutbreakHypothetical outbreakMorbidityCase dataEpidemiologyMortalityDiseaseHuman population
2015
Xenosurveillance: A Novel Mosquito-Based Approach for Examining the Human-Pathogen Landscape
Grubaugh ND, Sharma S, Krajacich BJ, Fakoli LS, Bolay FK, Diclaro JW, Johnson WE, Ebel GD, Foy BD, Brackney DE. Xenosurveillance: A Novel Mosquito-Based Approach for Examining the Human-Pathogen Landscape. PLOS Neglected Tropical Diseases 2015, 9: e0003628. PMID: 25775236, PMCID: PMC4361501, DOI: 10.1371/journal.pntd.0003628.Peer-Reviewed Original ResearchConceptsEpstein-Barr virusViral pathogensInfectious disease surveillance systemsViral nucleic acidsDisease surveillance systemsMosquito blood feedingMultiple viral pathogensRelevant concentrationsCanine distemper virusHigh riskInfectious diseasesDistemper virusHost bloodNext-generation sequencingQRT-PCRMosquito gutBloodBloodmeal ingestionSurveillance toolBlood feedingXenosurveillanceMosquito bloodmealsVirusVirus detectionNovel surveillance techniques