2024
DengueSeq: a pan-serotype whole genome amplicon sequencing protocol for dengue virus
Vogels C, Hill V, Breban M, Chaguza C, Paul L, Sodeinde A, Taylor-Salmon E, Ott I, Petrone M, Dijk D, Jonges M, Welkers M, Locksmith T, Dong Y, Tarigopula N, Tekin O, Schmedes S, Bunch S, Cano N, Jaber R, Panzera C, Stryker I, Vergara J, Zimler R, Kopp E, Heberlein L, Herzog K, Fauver J, Morrison A, Michael S, Grubaugh N. DengueSeq: a pan-serotype whole genome amplicon sequencing protocol for dengue virus. BMC Genomics 2024, 25: 433. PMID: 38693476, PMCID: PMC11062901, DOI: 10.1186/s12864-024-10350-x.Peer-Reviewed Original ResearchConceptsAmplicon sequencing protocolsPrimer schemeSequencing protocolGenomic surveillanceDengue virus serotypesAmplicon sequencing workflowClinical specimensHigh genome coverageWhole-genome sequencingDengue virusVirus serotypesGenome coverageVirus stocksGenetic diversitySequencing instrumentsSequencing workflowGenotype VIDiverse serotypesSequence of samplesGenotype IVPrimersSurveillance of dengue virusSerotypesVirus copiesSerotype-specific
2023
1802. Reconstructing Twelve Years of Dengue Outbreaks in the Caribbean Using Travel Surveillance
Taylor-Salmon E, Morrison A, Grubaugh N. 1802. Reconstructing Twelve Years of Dengue Outbreaks in the Caribbean Using Travel Surveillance. Open Forum Infectious Diseases 2023, 10: ofad500.1631. PMCID: PMC10678418, DOI: 10.1093/ofid/ofad500.1631.Peer-Reviewed Original ResearchPan American Health OrganizationSurveillance dataIncidence rateInfected travelersDengue casesDifferent dengue virus serotypesDengue virus infectionLocal outbreaksResource-limited countriesDengue incidenceDengue virus serotypesLocal incidence ratesPublic health policyDisease surveillance systemsCommon arboviral diseaseInfectious disease surveillanceFebrile illnessVirus infectionResource-limited areasLocal surveillanceIncidenceArboviral diseasesHealth policyVirus serotypesHealth Organization