2024
Less-is-more: selecting transcription factor binding regions informative for motif inference
Xu J, Gao J, Ni P, Gerstein M. Less-is-more: selecting transcription factor binding regions informative for motif inference. Nucleic Acids Research 2024, 52: e20-e20. PMID: 38214231, PMCID: PMC10899791, DOI: 10.1093/nar/gkad1240.Peer-Reviewed Original ResearchConceptsChIP-seq signalsChIP-seqGenomic regionsMotif inferenceTranscription factorsTargeting motifTranscription factor binding regionsChIP-seq datasetsNon-specific interactionsC-scoreDNA motifsBinding regionMotifTranscriptionTF signalingAccurate inferenceStronger signalSignalDNARegionTargetInteraction
2006
Relating Three-Dimensional Structures to Protein Networks Provides Evolutionary Insights
Kim PM, Lu LJ, Xia Y, Gerstein MB. Relating Three-Dimensional Structures to Protein Networks Provides Evolutionary Insights. Science 2006, 314: 1938-1941. PMID: 17185604, DOI: 10.1126/science.1136174.Peer-Reviewed Original Research