DNA-COMPACT: DNA COMpression Based on a Pattern-Aware Contextual Modeling Technique
Li P, Wang S, Kim J, Xiong H, Ohno-Machado L, Jiang X. DNA-COMPACT: DNA COMpression Based on a Pattern-Aware Contextual Modeling Technique. PLOS ONE 2013, 8: e80377. PMID: 24282536, PMCID: PMC3840021, DOI: 10.1371/journal.pone.0080377.Peer-Reviewed Original ResearchConceptsReference-free compressionDisk storage capacityCompression algorithmDecompression costData transferringArt algorithmsCompression performanceFile sizeGenome compressionCompression rateBit rateAlgorithmDNA compressionBiomedical researchersPerformance advantagesGenome dataModeling techniquesContextual modelImportant concernResearch purposesCompressionPerformanceStorage capacityBitsReference sequenceGenome Sequence Compression with Distributed Source Coding
Wang S, Jiang X, Cui L, Dai W, Deligiannis N, Li P, Xiong H, Cheng S, Ohno-Machado L. Genome Sequence Compression with Distributed Source Coding. 2013, 525-525. DOI: 10.1109/dcc.2013.104.Peer-Reviewed Original ResearchEncoder sideSource codingFile sizeLow processing capabilitiesHigh computational complexityLimited communication bandwidthFile size reductionLow-density parity-check (LDPC) decodersCompression frameworkHash codingBandwidth usageCommunication bandwidthParity-check decoderSequence compressionCompression techniquesAdaptive code lengthComputational complexityProcessing capabilitiesSmall storageMemory requirementsGenome compressionFactor graphGenome dataCode lengthCoding