2019
Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome
Carrión V, Perez-Jaramillo J, Cordovez V, Tracanna V, de Hollander M, Ruiz-Buck D, Mendes L, van Ijcken W, Gomez-Exposito R, Elsayed S, Mohanraju P, Arifah A, van der Oost J, Paulson J, Mendes R, van Wezel G, Medema M, Raaijmakers J. Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome. Science 2019, 366: 606-612. PMID: 31672892, DOI: 10.1126/science.aaw9285.Peer-Reviewed Original ResearchMeSH KeywordsBacteriaBacterial Physiological PhenomenaBacteroidetesBeta vulgarisBiodiversityChitinasesDisease ResistanceEndophytesFlavobacteriumGenes, BacterialGenome, BacterialMetagenomeMicrobiotaMutagenesis, Site-DirectedPeptide SynthasesPlant DiseasesPlant RootsPolyketide SynthasesRhizoctoniaSoil MicrobiologyConceptsEndophytic root microbiomeNonribosomal peptide synthetasesGene clusterPolyketide synthaseRoot microbiomeBiosynthetic gene clusterInfection of plant rootsFungal root diseasesSite-directed mutagenesisPromote plant growthGenome reconstructionPeptide synthetasesRoot endosphereFunctional traitsNRPS-PKSFunctional diversityChitinase geneEndophytic consortiaFungal infectionsDisease suppressionRoot diseasePlant growthNetwork inferenceDisease-suppressive functionsPlant roots
2017
Simplified and representative bacterial community of maize roots
Niu B, Paulson J, Zheng X, Kolter R. Simplified and representative bacterial community of maize roots. Proceedings Of The National Academy Of Sciences Of The United States Of America 2017, 114: e2450-e2459. PMID: 28275097, PMCID: PMC5373366, DOI: 10.1073/pnas.1616148114.Peer-Reviewed Original ResearchConceptsCommunity assemblyBacterial communitiesDynamics of community assemblyComposition of plant microbiomesBacterial interspecies interactionsSynthetic bacterial communityPlant-associated microbesCulture-dependent methodsRoot microbiome assemblyHost-mediated selectionFusarium verticillioides</i>Maize rootsRoot microbiotaMicrobiome assemblyPlant microbiomeRoot microbiomePlant hostsHost genotypeKeystone speciesDominant phylaAbiotic factorsInterspecies interactionsModel ecosystemsMicrobiomeMaize seedlings