2022
Disentangling the genetic basis of rhizosphere microbiome assembly in tomato
Oyserman B, Flores S, Griffioen T, Pan X, van der Wijk E, Pronk L, Lokhorst W, Nurfikari A, Paulson J, Movassagh M, Stopnisek N, Kupczok A, Cordovez V, Carrión V, Ligterink W, Snoek B, Medema M, Raaijmakers J. Disentangling the genetic basis of rhizosphere microbiome assembly in tomato. Nature Communications 2022, 13: 3228. PMID: 35710629, PMCID: PMC9203511, DOI: 10.1038/s41467-022-30849-9.Peer-Reviewed Original ResearchConceptsMicrobiome assemblyGenetic basisRhizosphere microbiome assemblyMetagenome-assembled genomesGene content analysisQuantitative trait lociDomestication sweepsDomesticated tomatoRhizosphere microbiomePutative plantPlant geneticsTrait lociBacterial genesPlant growthHybrid populationsQuantitative traitsBreeding programsMbp regionGenetic variation associatesPlant polysaccharidesDifferential recruitmentTomatoStreptomycesTraitsPivotal role
2019
Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome
Carrión V, Perez-Jaramillo J, Cordovez V, Tracanna V, de Hollander M, Ruiz-Buck D, Mendes L, van Ijcken W, Gomez-Exposito R, Elsayed S, Mohanraju P, Arifah A, van der Oost J, Paulson J, Mendes R, van Wezel G, Medema M, Raaijmakers J. Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome. Science 2019, 366: 606-612. PMID: 31672892, DOI: 10.1126/science.aaw9285.Peer-Reviewed Original ResearchMeSH KeywordsBacteriaBacterial Physiological PhenomenaBacteroidetesBeta vulgarisBiodiversityChitinasesDisease ResistanceEndophytesFlavobacteriumGenes, BacterialGenome, BacterialMetagenomeMicrobiotaMutagenesis, Site-DirectedPeptide SynthasesPlant DiseasesPlant RootsPolyketide SynthasesRhizoctoniaSoil MicrobiologyConceptsEndophytic root microbiomeNonribosomal peptide synthetasesGene clusterPolyketide synthaseRoot microbiomeBiosynthetic gene clusterInfection of plant rootsFungal root diseasesSite-directed mutagenesisPromote plant growthGenome reconstructionPeptide synthetasesRoot endosphereFunctional traitsNRPS-PKSFunctional diversityChitinase geneEndophytic consortiaFungal infectionsDisease suppressionRoot diseasePlant growthNetwork inferenceDisease-suppressive functionsPlant roots