2018
Draft Genome Sequence of an Erwinia tracheiphila Isolate from an Infected Muskmelon (Cucumis melo)
Shapiro L, Andrade A, Scully E, Rocha J, Paulson J, Kolter R. Draft Genome Sequence of an Erwinia tracheiphila Isolate from an Infected Muskmelon (Cucumis melo). Microbiology Resource Announcements 2018, 7: 10.1128/mra.01058-18. PMID: 30533754, PMCID: PMC6256489, DOI: 10.1128/mra.01058-18.Peer-Reviewed Original ResearchInfected muskmelonDraft genome sequenceBacterial plant pathogensCucumis meloChromosome contigPlasmid contigsEastern North AmericaGenome sequencePlant pathogensE. tracheiphilaGenetic variationErwinia tracheiphilaContigsGenomeCucumisNorth AmericaMuskmelonBacteriophageErwiniaPlasmidPathogensSequenceIsolates
2014
Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition
Pop M, Walker A, Paulson J, Lindsay B, Antonio M, Hossain M, Oundo J, Tamboura B, Mai V, Astrovskaya I, Bravo H, Rance R, Stares M, Levine M, Panchalingam S, Kotloff K, Ikumapayi U, Ebruke C, Adeyemi M, Ahmed D, Ahmed F, Alam M, Amin R, Siddiqui S, Ochieng J, Ouma E, Juma J, Mailu E, Omore R, Morris J, Breiman R, Saha D, Parkhill J, Nataro J, Stine O. Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition. Genome Biology 2014, 15: r76. PMID: 24995464, PMCID: PMC4072981, DOI: 10.1186/gb-2014-15-6-r76.Peer-Reviewed Original ResearchConceptsMicrobiota compositionAnaerobic lineagesRRNA gene sequencesGut microbiota compositionLevels of PrevotellaDiarrhea-causing pathogensSevere diarrheal diseaseIntestinal microbiota compositionFecal microbiota compositionGene sequencesDiarrheal pathogensDiarrhea pathogensMolecular techniquesPathogensDiarrhea-free controlsGranulicatella speciesEscherichia/ShigellaDiarrheal diseaseLineagesMSD casesYears of ageBackgroundDiarrheal diseasesYoung childrenAssociated with MSDLow-income countries