2020
MicrobiomeExplorer: an R package for the analysis and visualization of microbial communities
Reeder J, Huang M, Kaminker J, Paulson J. MicrobiomeExplorer: an R package for the analysis and visualization of microbial communities. Bioinformatics 2020, 37: 1317-1318. PMID: 32960962, PMCID: PMC8193707, DOI: 10.1093/bioinformatics/btaa838.Peer-Reviewed Original Research
2019
metagenomeFeatures: an R package for working with 16S rRNA reference databases and marker-gene survey feature data
Olson N, Shah N, Kancherla J, Wagner J, Paulson J, Bravo H. metagenomeFeatures: an R package for working with 16S rRNA reference databases and marker-gene survey feature data. Bioinformatics 2019, 35: 3870-3872. PMID: 30821316, PMCID: PMC6761971, DOI: 10.1093/bioinformatics/btz136.Peer-Reviewed Original Research
2016
Privacy-preserving microbiome analysis using secure computation
Wagner J, Paulson J, Wang X, Bhattacharjee B, Corrada Bravo H. Privacy-preserving microbiome analysis using secure computation. Bioinformatics 2016, 32: 1873-1879. PMID: 26873931, PMCID: PMC4908319, DOI: 10.1093/bioinformatics/btw073.Peer-Reviewed Original ResearchConceptsDNA of micro-organismsMicrobiome research communityPrivacy concernsSensitive attributesResearch participant dataFeature countsSharing dataSupplementary dataMetagenomic analysisResearch datasetsMicrobiome sequencingSequencing studiesMicrobial DNAHuman DNAResearch communityMicrobiome analysisMicrobiomeDNAAnalysis toolsDatasetComputerMicro-organismsBioinformaticsImplementationIndividual collections