2022
Atlas-Based Semantic Segmentation of Prostate Zones
Zhang J, Venkataraman R, Staib L, Onofrey J. Atlas-Based Semantic Segmentation of Prostate Zones. Lecture Notes In Computer Science 2022, 13435: 570-579. PMID: 38084296, PMCID: PMC10711803, DOI: 10.1007/978-3-031-16443-9_55.Peer-Reviewed Original ResearchSegmentation resultsSemantic segmentation frameworkSemantic segmentation resultsDice similarity coefficient valuesSemantic segmentationInference stageSegmentation frameworkSegmentation performanceExternal test datasetTest datasetRegion of interestSegmentationAnatomical atlasHyperparametersSimilarity coefficient valuesAnatomical informationGitHubUsersDatasetProstate zonesCodeFrameworkInformation
2021
Weakly Supervised Deep Learning for Aortic Valve Finite Element Mesh Generation from 3D CT Images
Pak D, Liu M, Ahn S, Caballero A, Onofrey J, Liang L, Sun W, Duncan J. Weakly Supervised Deep Learning for Aortic Valve Finite Element Mesh Generation from 3D CT Images. Lecture Notes In Computer Science 2021, 12729: 637-648. DOI: 10.1007/978-3-030-78191-0_49.Peer-Reviewed Original ResearchSupervised deep learningTranscather aortic valve replacementDeep learningSegmentation labelsMesh generationCorrespondence accuracyHeavy assumptionsFinite element mesh generationMesh topologyVolumetric meshLow contrastSignificant bottleneckValve modelingProblem formulationPrediction modelModel performanceCT imagesDeformation strategyLarge amountImagesBottleneckLearningMeshFrameworkLabels
2020
Supervised Machine Learning in Oncology: A Clinician's Guide
Murali N, Kucukkaya A, Petukhova A, Onofrey J, Chapiro J. Supervised Machine Learning in Oncology: A Clinician's Guide. Digestive Disease Interventions 2020, 04: 073-081. PMID: 32869010, PMCID: PMC7456427, DOI: 10.1055/s-0040-1705097.Peer-Reviewed Original ResearchMachine learningSupervised machineSupervised machine learning methodsNew data processing technologiesLarge volume dataData processing technologySupervised machine learningMachine learning methodsSelf-improving modelElectronic health recordsLearning methodsHealth recordsComputer algorithmWidespread adoptionLearningMeaningful insightsMachineAlgorithmTechnologyTechniqueFrameworkInformationAdoptionDataApplications