2024
NLP Applications—Other Biomedical Texts
Roberts K, Xu H, Demner Fushman D. NLP Applications—Other Biomedical Texts. Cognitive Informatics In Biomedicine And Healthcare 2024, 429-444. DOI: 10.1007/978-3-031-55865-8_15.Peer-Reviewed Original Research
2007
A study of abbreviations in clinical notes.
Xu H, Stetson P, Friedman C. A study of abbreviations in clinical notes. AMIA Annual Symposium Proceedings 2007, 2007: 821-5. PMID: 18693951, PMCID: PMC2655910.Peer-Reviewed Original ResearchConceptsUnified Medical Language SystemNatural language processing systemsLanguage processing systemNarrative clinical notesDetection methodClinical notesDifferent knowledge sourcesSense inventoryDomain expertsNLP systemsCorrect sensesDecision supportText corporaKnowledge sourcesError detectionProcessing systemBiomedical literatureStudy of abbreviationsLanguage systemPatient informationAmbiguity rateBetter detection methodsDatabaseAnnotationAbbreviationsGene symbol disambiguation using knowledge-based profiles
Xu H, Fan J, Hripcsak G, Mendonça E, Markatou M, Friedman C. Gene symbol disambiguation using knowledge-based profiles. Bioinformatics 2007, 23: 1015-1022. PMID: 17314123, DOI: 10.1093/bioinformatics/btm056.Peer-Reviewed Original ResearchConceptsKnowledge sourcesSimilarity scoresInformation retrieval methodsGene symbol disambiguationText mining systemKnowledge-based profilesTesting data setsBiomedical entitiesBiomedical domainMEDLINE abstractsHigh similarity scoresRetrieval methodAmbiguous genesEntrez GeneGene symbolsDisambiguation taskTesting set