2019
Developing Customizable Cancer Information Extraction Modules for Pathology Reports Using CLAMP
Soysal E, Warner J, Wang J, Jiang M, Harvey K, Jain S, Dong X, Song H, Siddhanamatha H, Wang L, Dai Q, Chen Q, Du X, Tao C, Yang P, Denny J, Liu H, Xu H. Developing Customizable Cancer Information Extraction Modules for Pathology Reports Using CLAMP. 2019, 264: 1041-1045. PMID: 31438083, PMCID: PMC7359882, DOI: 10.3233/shti190383.Peer-Reviewed Original ResearchConceptsElectronic health recordsNLP solutionNatural language processing technologyInformation extraction moduleLanguage processing technologyInformation extraction tasksUser-friendly interfaceBest F-measureInformation extractionExtraction moduleExtraction taskCustomizable modulesNLP systemsF-measureAcademic useHealth recordsComparable performanceProcessing technologyVanderbilt University Medical CenterModuleDiverse typesInformationNLPSubstantial effortSystem
2016
CD-REST: a system for extracting chemical-induced disease relation in literature
Xu J, Wu Y, Zhang Y, Wang J, Lee H, Xu H. CD-REST: a system for extracting chemical-induced disease relation in literature. Database 2016, 2016: baw036. PMID: 27016700, PMCID: PMC4808251, DOI: 10.1093/database/baw036.Peer-Reviewed Original ResearchConceptsChemical-induced disease relationsWeb servicesBiomedical literatureEntity recognitionMachine learning-based approachLearning-based approachHTTP POST requestRelation extraction systemVector space modelConditional Random FieldsSupport vector machineRelation extraction moduleVast biomedical literatureDisease relation extractionChemical-induced disease relation extractionExtraction moduleDisease relationsAutomatic extractionEnd systemPOST requestRelation extractionNormalization moduleVector machineBioCreative VDemonstration system