Exploiting ontology graph for predicting sparsely annotated gene function
Wang S, Cho H, Zhai C, Berger B, Peng J. Exploiting ontology graph for predicting sparsely annotated gene function. Bioinformatics 2015, 31: i357-i364. PMID: 26072504, PMCID: PMC4542782, DOI: 10.1093/bioinformatics/btv260.Peer-Reviewed Original ResearchConceptsFunction prediction algorithmsPrediction algorithmVariety of algorithmsFunctional labelsOntology graphCross-validation experimentsOverfitting problemGraph structurePrevious stateGene functionAlgorithmAnnotation catalogsTens of thousandsMolecular interaction networksFunction predictionOntology databasePoor predictive performanceAnnotationLabelsPredictive performanceGene Ontology databaseInformationLarge numberGO termsInteraction networksDiffusion Component Analysis: Unraveling Functional Topology in Biological Networks
Cho H, Berger B, Peng J. Diffusion Component Analysis: Unraveling Functional Topology in Biological Networks. Lecture Notes In Computer Science 2015, 9029: 62-64. PMID: 28748230, PMCID: PMC5524124, DOI: 10.1007/978-3-319-16706-0_9.Peer-Reviewed Original Research