2023
Attentive continuous generative self-training for unsupervised domain adaptive medical image translation
Liu X, Prince J, Xing F, Zhuo J, Reese T, Stone M, El Fakhri G, Woo J. Attentive continuous generative self-training for unsupervised domain adaptive medical image translation. Medical Image Analysis 2023, 88: 102851. PMID: 37329854, PMCID: PMC10527936, DOI: 10.1016/j.media.2023.102851.Peer-Reviewed Original ResearchMeSH KeywordsAnisotropyBayes TheoremHumansImage Processing, Computer-AssistedLearningReproducibility of ResultsUncertaintyConceptsUnsupervised domain adaptationImage translationProblem of domain shiftSelf-trainingImage modality translationLabeled source domainTarget domain dataSelf-attention schemeAlternating optimization schemeHeterogeneous target domainContinuous value predictionPseudo-labelsDomain adaptationUDA methodsDomain shiftSoftmax probabilitiesSource domainTarget domainVariational BayesBackground regionsTranslation tasksTraining processDomain dataGeneration taskOptimization scheme
2022
Posterior estimation using deep learning: a simulation study of compartmental modeling in dynamic positron emission tomography
Liu X, Marin T, Amal T, Woo J, Fakhri G, Ouyang J. Posterior estimation using deep learning: a simulation study of compartmental modeling in dynamic positron emission tomography. Medical Physics 2022, 50: 1539-1548. PMID: 36331429, PMCID: PMC10087283, DOI: 10.1002/mp.16078.Peer-Reviewed Original ResearchMeSH KeywordsBayes TheoremComputer SimulationDeep LearningNeural Networks, ComputerPositron-Emission TomographyConceptsConditional variational auto-encoderDeep learning approachNeural networkDeep learningMarkov chain Monte CarloVariational Bayesian inference frameworkLearning approachDeep learning-based approachVariational auto-encoderDeep neural networksLearning-based approachDynamic brain PET imagingPosterior distributionEstimate posterior distributionsBayesian inference frameworkAuto-encoderMedical imagesInference frameworkNetworkSimulation studyBrain PET imagingLearningPosterior estimatesInferior performanceImages
2016
Validation of Bayesian analysis of compartmental kinetic models in medical imaging
Sitek A, Li Q, Fakhri G, Alpert N. Validation of Bayesian analysis of compartmental kinetic models in medical imaging. Physica Medica 2016, 32: 1252-1258. PMID: 27692754, PMCID: PMC5720163, DOI: 10.1016/j.ejmp.2016.09.010.Peer-Reviewed Original ResearchConceptsAccurate estimation of uncertaintyComputer simulationsMedical imagesPosterior distributionDistributed noiseTime series of imagesClosed-formSeries of imagesData setsKinetic parametersMarkov chain Monte Carlo methodsPosterior distributions of kinetic parametersNon-linear least squares methodAccurate estimationComputerLeast-squares methodKinetic modelEstimation of kinetic parametersF18-fluorodeoxyglucoseBayesian estimationImagesStatistical inferenceMonte Carlo methodEstimates of uncertaintyInformationA Bayesian spatial temporal mixtures approach to kinetic parametric images in dynamic positron emission tomography
Zhu W, Ouyang J, Rakvongthai Y, Guehl N, Wooten D, Fakhri G, Normandin M, Fan Y. A Bayesian spatial temporal mixtures approach to kinetic parametric images in dynamic positron emission tomography. Medical Physics 2016, 43: 1222-1234. PMID: 26936707, PMCID: PMC5025019, DOI: 10.1118/1.4941010.Peer-Reviewed Original ResearchConceptsPositron emission tomographySpatial mixture modelNearby voxelsMixture modelEmission tomographyDynamic positron emission tomographyK-means methodKinetic modelKinetic parametric imagesOne-compartment kinetic modelNovel algorithmTemporal informationClassification purposesMeasurement of local perfusionLocal perfusionTime activity curvesNormal ROIsTemporal modelBayesian algorithmCardiac studiesMarkov chain Monte CarloParameter estimationNoise regionSimulation experimentsSimulated data sets
2012
Parametric imaging with Bayesian priors: A validation study with 11C-Altropane PET
Fang Y, Fakhri G, Becker J, Alpert N. Parametric imaging with Bayesian priors: A validation study with 11C-Altropane PET. NeuroImage 2012, 61: 131-138. PMID: 22425668, DOI: 10.1016/j.neuroimage.2012.03.003.Peer-Reviewed Original ResearchMeSH KeywordsAdolescentAdultAlgorithmsBayes TheoremBiasCarbon RadioisotopesCocaineData Interpretation, StatisticalFemaleHumansImage Processing, Computer-AssistedKineticsLeast-Squares AnalysisMaleMiddle AgedNeuroimagingNonlinear DynamicsNormal DistributionPopulationPositron-Emission TomographyRadiopharmaceuticalsReference ValuesSample SizeYoung Adult