NODeJ: an ImageJ plugin for 3D segmentation of nuclear objects
Dubos T, Poulet A, Thomson G, Péry E, Chausse F, Tatout C, Desset S, van Wolfswinkel JC, Jacob Y. NODeJ: an ImageJ plugin for 3D segmentation of nuclear objects. BMC Bioinformatics 2022, 23: 216. PMID: 35668354, PMCID: PMC9169307, DOI: 10.1186/s12859-022-04743-6.Peer-Reviewed Original ResearchConceptsImageJ pluginCommand-line optionsChromatin organizationThree-dimensional imaging technologyArabidopsis thaliana nucleiDNA FISH experimentsNodeJSSource codePublic datasetsProgram segmentsReduced processing timePluginProcessing timeAbiotic stressesHeterochromatin domainsLaplacian convolutionFISH experimentsSubnuclear structuresCellular processesHigh-throughput analysisPlant systemsProcessing methodsDiverse setImaging technologyImagesThe histone H3.1 variant regulates TONSOKU-mediated DNA repair during replication
Davarinejad H, Huang YC, Mermaz B, LeBlanc C, Poulet A, Thomson G, Joly V, Muñoz M, Arvanitis-Vigneault A, Valsakumar D, Villarino G, Ross A, Rotstein BH, Alarcon EI, Brunzelle JS, Voigt P, Dong J, Couture JF, Jacob Y. The histone H3.1 variant regulates TONSOKU-mediated DNA repair during replication. Science 2022, 375: 1281-1286. PMID: 35298257, PMCID: PMC9153895, DOI: 10.1126/science.abm5320.Peer-Reviewed Original ResearchConceptsTetratricopeptide repeat domainDNA polymerase thetaMulticellular eukaryotesHistone H3.1Replication forksChromatin maturationRepeat domainDNA repairGenomic instabilityPolymerase thetaPosition 31Amino acidsH3.1PlantsReplicationEukaryotesH3.3HistonesMonomethylationVariantsCommon strategyForkResiduesMaturationFunction