1996
A second and differentially expressed glutamyl-tRNA reductase gene from Arabidopsis thaliana
Kumar A, Csankovszki G, Söll D. A second and differentially expressed glutamyl-tRNA reductase gene from Arabidopsis thaliana. Plant Molecular Biology 1996, 30: 419-426. PMID: 8605295, DOI: 10.1007/bf00049321.Peer-Reviewed Original ResearchConceptsAbstract5-Aminolevulinic acidHemA geneArabidopsis thalianaC5 pathwayGlutamyl-tRNA reductase geneDeduced amino acid sequenceLight-inducible genesChloroplasts of plantsGlutamyl-tRNA reductaseAmino acid sequenceA. thalianaChlorophyll biosynthesisShort intronsGenomic libraryGlutamyl-tRNARegulatory elementsALA formationNucleotide sequenceUniversal precursorAcid sequenceReductase geneGenomic DNAThalianaGenesAmino acids
1992
Chloroplast tRNAAsp: nucleotide sequence and variation of in vivo levels during plastid maturation
Schön A, Gough S, Söll D. Chloroplast tRNAAsp: nucleotide sequence and variation of in vivo levels during plastid maturation. Plant Molecular Biology 1992, 20: 601-607. PMID: 1450377, DOI: 10.1007/bf00046445.Peer-Reviewed Original ResearchOrganization and nucleotide sequence of the glutamine synthetase (glnA) gene from Lactobacillus delbrueckii subsp. bulgaricus
Ishino Y, Morgenthaler P, Hottinger H, Söll D. Organization and nucleotide sequence of the glutamine synthetase (glnA) gene from Lactobacillus delbrueckii subsp. bulgaricus. Applied And Environmental Microbiology 1992, 58: 3165-3169. PMID: 1359838, PMCID: PMC183065, DOI: 10.1128/aem.58.9.3165-3169.1992.Peer-Reviewed Original ResearchConceptsOpen reading frameGlnA geneReading frameGlnA gene expressionGlutamine synthetase geneL. delbrueckii subspDNA sequence analysisMaxicell methodLactobacillus delbrueckii subspDelbrueckii subspGlnR geneDeletion strainNegative eubacteriaPositive eubacteriaSynthetase geneExtensive homologyRepressor geneNucleotide sequencePresent upstreamGene expressionBamHI fragmentUnknown functionSequence analysisClostridium acetobutylicumGenes
1991
The Human Genome Project: a paradigm for information management in the life sciences
Pearson M, Söll D. The Human Genome Project: a paradigm for information management in the life sciences. The FASEB Journal 1991, 5: 35-39. PMID: 1991581, DOI: 10.1096/fasebj.5.1.1991581.Peer-Reviewed Original Research
1988
The nucleotide sequences of barley cytoplasmic glutamate transfer RNAs and structural features essential for formation of δ-aminolevulinic acid
Peterson D, Schön A, Söll D. The nucleotide sequences of barley cytoplasmic glutamate transfer RNAs and structural features essential for formation of δ-aminolevulinic acid. Plant Molecular Biology 1988, 11: 293-299. PMID: 24272342, DOI: 10.1007/bf00027386.Peer-Reviewed Original ResearchChloroplast aminoacyl-tRNA synthetasesGlu-tRNA reductaseNumber of prokaryotesΔ-aminolevulinic acidMultistep enzymatic pathwayAminoacyl-tRNA synthetasesGlu-tRNATRNA discriminationTransfer RNAALA formationNucleotide sequenceALA synthesisBarley chloroplastsUniversal precursorBarley embryosChloroplastsStructural featuresEnzymatic pathwaysTRNAAlaProkaryotesSynthetasesRNAEmbryosSpecies
1987
Allele-specific complementation of an Escherichia coli leuB mutation by a Lactobacillus bulgaricus tRNA gene
Hottinger H, Ohgi T, Zwahlen M, Dhamija S, Söll D. Allele-specific complementation of an Escherichia coli leuB mutation by a Lactobacillus bulgaricus tRNA gene. Gene 1987, 60: 75-83. PMID: 3326787, DOI: 10.1016/0378-1119(87)90215-0.Peer-Reviewed Original ResearchConceptsTRNA genesCopy numberWild-type formE. coli promotersHigh copy numberGene copy numberLeuB mutationClone bankLeucine prototrophyLow copy numberMissense suppressionNucleotide sequenceSerine tRNATerminator elementsGenesRestoration of activityTRNAEscherichia coliAmino acidsGene allelesExtra armE. coli
1986
The nucleotide sequence, localization and transcriptional properties of a tRNACUGLeu gene from Drosophila melanogaster
Glew L, Lo R, Recce T, Nichols M, Söll D, Bell J. The nucleotide sequence, localization and transcriptional properties of a tRNACUGLeu gene from Drosophila melanogaster. Gene 1986, 44: 307-314. PMID: 2946625, DOI: 10.1016/0378-1119(86)90195-2.Peer-Reviewed Original ResearchThe nucleotide sequence of a wheat γ-gliadin genomic clone
Sugiyama T, Rafalski A, Söll D. The nucleotide sequence of a wheat γ-gliadin genomic clone. Plant Science 1986, 44: 205-209. DOI: 10.1016/0168-9452(86)90092-0.Peer-Reviewed Original Research
1985
supN ochre suppressor gene in Escherichia coli codes for tRNALys
Uemura H, Thorbjarnardóttir S, Gamulin V, Yano J, Andrésson O, Söll D, Eggertsson G. supN ochre suppressor gene in Escherichia coli codes for tRNALys. Journal Of Bacteriology 1985, 163: 1288-1289. PMID: 3897192, PMCID: PMC219277, DOI: 10.1128/jb.163.3.1288-1289.1985.Peer-Reviewed Original ResearchNucleotide sequences of two serine tRNAs with a GGA anticodon: the structure-function relationships in the serine family of E. coli tRNAs
Grosjean H, Nicoghosian K, Haumont E, Söll D, Cedergren R. Nucleotide sequences of two serine tRNAs with a GGA anticodon: the structure-function relationships in the serine family of E. coli tRNAs. Nucleic Acids Research 1985, 13: 5697-5706. PMID: 3898020, PMCID: PMC321899, DOI: 10.1093/nar/13.15.5697.Peer-Reviewed Original ResearchConceptsSerine tRNANucleotide sequenceRecent common ancestorE. coli tRNACodon-anticodon interactionStructure-function relationshipsEubacterial originUCU codonsEvolutionary analysisCommon ancestorD-loopTRNAAnticodon stemSerine familyAnticodonGenesE. coliMinor speciesCodonMajor speciesSpeciesSequenceTRNASerAncestorSerineLeucine tRNA family of Escherichia coli: nucleotide sequence of the supP(Am) suppressor gene
Thorbjarnardóttir S, Dingermann T, Rafnar T, Andrésson O, Söll D, Eggertsson G. Leucine tRNA family of Escherichia coli: nucleotide sequence of the supP(Am) suppressor gene. Journal Of Bacteriology 1985, 161: 219-222. PMID: 2981802, PMCID: PMC214859, DOI: 10.1128/jb.161.1.219-222.1985.Peer-Reviewed Original ResearchConceptsSuppressor allelesLeuX geneAmber suppressor allelesMature coding sequenceLeucyl-tRNA synthetaseSingle base changeTRNA familiesCAA anticodonBox sequenceTermination signalDNA sequencesNucleotide sequenceBacteriophage T4Coding sequenceAminoacyl stemSuppressor geneLoop regionTRNABase changesEscherichia coliGenesE. coliSequenceColiAlleles
1984
Mutations affecting excision of the intron from a eukaryotic dimeric tRNA precursor.
Willis I, Hottinger H, Pearson D, Chisholm V, Leupold U, Söll D. Mutations affecting excision of the intron from a eukaryotic dimeric tRNA precursor. The EMBO Journal 1984, 3: 1573-1580. PMID: 6430697, PMCID: PMC557561, DOI: 10.1002/j.1460-2075.1984.tb02013.x.Peer-Reviewed Original ResearchConceptsTRNA precursorsDimeric tRNA precursorSerine tRNA geneEfficiency of splicingPrecursor tRNA processingSingle base changeTRNA genesTRNASer geneTRNA processingGene transcriptionNucleotide sequenceUGA mutationsD-loopMutant geneGenesBase changesExtra armMutationsIntronsTranscriptionVivo systemDimeric precursorSequenceTRNASerSplicingDevelopmentally regulated plant genes: the nucleotide sequence of a wheat gliadin genomic clone.
Rafalski J, Scheets K, Metzler M, Peterson D, Hedgcoth C, Söll D. Developmentally regulated plant genes: the nucleotide sequence of a wheat gliadin genomic clone. The EMBO Journal 1984, 3: 1409-1415. PMID: 6204862, PMCID: PMC557531, DOI: 10.1002/j.1460-2075.1984.tb01985.x.Peer-Reviewed Original ResearchConceptsCDNA clonesGenomic clonesWheat genomic libraryWheat seed storage proteinsInternal sequence repetitionSeed storage proteinsSuch genomic clonesTranslation termination codonEukaryotic promoter sequencesPlant genesNorthern blot analysisMultigene familyGliadin genesGenomic libraryHybrid-selected mRNA translationMRNA translationCDNA sequenceGene sequencesPromoter sequencesCDNA libraryStorage proteinsDNA sequencesNucleotide sequenceNumber of clonesTermination codon
1982
Escherichia coli glutaminyl-tRNA synthetase. I. Isolation and DNA sequence of the glnS gene.
Yamao F, Inokuchi H, Cheung A, Ozeki H, Söll D. Escherichia coli glutaminyl-tRNA synthetase. I. Isolation and DNA sequence of the glnS gene. Journal Of Biological Chemistry 1982, 257: 11639-11643. PMID: 6288695, DOI: 10.1016/s0021-9258(18)33810-9.Peer-Reviewed Original ResearchOrganization and nucleotide sequence of nuclear 5S rRNA genes in yellow lupin ( Lupinus lutens )
Rafalski J, Wiewiorowski M, SÖll D. Organization and nucleotide sequence of nuclear 5S rRNA genes in yellow lupin ( Lupinus lutens ). Nucleic Acids Research 1982, 10: 7635-7642. PMID: 7155897, PMCID: PMC327035, DOI: 10.1093/nar/10.23.7635.Peer-Reviewed Original ResearchThe 5.8S RNA gene sequence and the ribosomal repeat of Schizosaccharomyces pombe
Schaak J, Mao J, Söll D. The 5.8S RNA gene sequence and the ribosomal repeat of Schizosaccharomyces pombe. Nucleic Acids Research 1982, 10: 2851-2864. PMID: 6285312, PMCID: PMC320660, DOI: 10.1093/nar/10.9.2851.Peer-Reviewed Original ResearchConceptsRNA genesSchizosaccharomyces pombeRNA speciesGene sequencesDNA fragmentsKb HindIII DNA fragmentRRNA gene repeatsRNA gene sequencesKb DNA fragmentHindIII DNA fragmentSecondary structure modelNumber of nucleotidesHigher eukaryotesGene repeatIntergenic spacerN. crassaRibosomal repeatNucleotide sequenceS. cerevisiaeGreatest homologySequence differencesVariable stemGenesRNARepeats
1980
Analysis of a drosophila tRNA gene cluster
Hovemann B, Sharp S, Yamada H, Söll D. Analysis of a drosophila tRNA gene cluster. Cell 1980, 19: 889-895. PMID: 6769590, DOI: 10.1016/0092-8674(80)90080-x.Peer-Reviewed Original ResearchConceptsTRNA genesFlanking regionsTRNA gene clusterDrosophila tRNA genesTranscription control regionsSecondary structure featuresTranscription directionDrosophila DNAGene clusterMature tRNATRNALys geneControl regionDNA sequencesNucleotide sequenceConsensus sequenceGene regionKb fragmentTerminal sequenceGenesCol E1DNA strandsDNATRNAHybridization of DNASequence
1979
The nucleotide sequence of a cloned Drosophila arginine tRNA gene and its in vitro transcription in Xenopus germinal vesicle extracts.
Silverman S, Schmidt O, Söll D, Hovemann B. The nucleotide sequence of a cloned Drosophila arginine tRNA gene and its in vitro transcription in Xenopus germinal vesicle extracts. Journal Of Biological Chemistry 1979, 254: 10290-10294. PMID: 114522, DOI: 10.1016/s0021-9258(19)86707-8.Peer-Reviewed Original ResearchConceptsMature tRNAPrecursor RNANucleotide sequenceDrosophila tRNAArg geneGerminal vesicle extractsArginine tRNA geneXenopus germinal vesicleTRNA genesTRNAArg genePrimary transcriptDNA sequencesLeader sequenceVesicle extractsT residuesGenesTranscriptionGerminal vesicleTerminusVitro systemTRNAA sequenceRNASequenceNucleotidesTRNAArgThe nucleotide sequence of lysine tRNA 2 from Drosophila
Silverman S, Gillam I, Tener G, Söll D. The nucleotide sequence of lysine tRNA 2 from Drosophila. Nucleic Acids Research 1979, 6: 435-442. PMID: 106371, PMCID: PMC327705, DOI: 10.1093/nar/6.2.435.Peer-Reviewed Original ResearchIdentification and nucleotide sequence of the sup8-e UGA-suppressor leucine tRNA from Schizosaccharomyces pombe
Wetzel R, Kohli J, Altruda F, Söll D. Identification and nucleotide sequence of the sup8-e UGA-suppressor leucine tRNA from Schizosaccharomyces pombe. Molecular Genetics And Genomics 1979, 172: 221-228. PMID: 289895, DOI: 10.1007/bf00268286.Peer-Reviewed Original ResearchConceptsSuppressor tRNANucleotide sequenceTwo-dimensional gel electrophoresisS. pombe strainRabbit globin mRNAGel sequencing methodsWheat germ extractUGA suppressor tRNASchizosaccharomyces pombeAnticodon sequenceUGA codonOpal suppressionPombe strainGlobin mRNAC-AOHTRNALeucine tRNAGerm extractAnticodon loopSequencing methodsG-m5CGel electrophoresisSequenceSuppressor assaysSchizosaccharomyces