Nicola Micali, PhD
Associate Research Scientist in NeuroscienceCards
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Associate Research Scientist in Neuroscience
Biography
Dr. Micali is associate research scientist in Rakic lab. He received his Master Degree in Biology from the State University of Lecce-Italy, and then his Ph.D in Genetics, Molecular and Cellular Biology from the State University of Milan-Italy. He worked at the Molecular Genetics unit led by Professor Francesco Blasi, at the San Raffaele Scientific Institute (Milan) on the role of TALE transcription factors (Pbx, Prep and Meis) in controlling cell survival and proliferation genes during mammalian development, using mouse and human “diseased” genetics models such as Down Syndrome patient derived cells, and cancer cells. Dr. Micali received a post-doctoral training in molecular neurodevelopmental biology at the Lieber Institute for Brain Development (LIBD), Johns Hopkins Medical School, Baltimore-USA. Here, he worked in Dr. Ronald McKay's lab on modeling corticogenesis in vitro and defining the cellular and transcriptional dynamics as human neural stem cells (NSCs) progress throughout neurogenesis. At LIBD, Dr. Micali studied the key molecular steps that control the generation of functional cortical neurons from NSCs derived from fetal mouse and human pluripotent stem cells (hPSCs), and the regulatory events that during corticogenesis control different developmental neural lineages. Major interest was dedicated to understand the role of fate determinant molecules, such as FGF2, BMPs and WNTs in specifying NSC states and neurogenesis. Dr. Micali has also been involved in projects to define and systematically analyze developmental variation in multiple hPSC lines. He collaborated with AstraZeneca Neuroscience in a genetic study to screen schizophrenia patient specific iPSC derived neurons. In this pipeline, he was directly involved in the development of new cellular assays. Dr. Micali is currently in Professor Pasko Rakic's lab, where he continues to study the regulatory mechanisms of radial glial cell (RGC) specification, in particular patterning and cortical area specification. Dr. Micali is working to identify new neuronal subtype precursors during the development of neocortex in rodents, non-human primates (NHP) and humans. His current focus is on the identification and characterization of the cellular and transcriptional dynamics underlying the species-specific differences in corticogenesis.
Appointments
Neuroscience
Associate Research ScientistPrimary
Other Departments & Organizations
- All Institutions
- Neuroscience
- Rakic Lab
Education & Training
- Post-doctoral fellow
- Lieber Institute for Brain Development-Johns Hopkins Medical school
- PhD
- State University of Milan-Italy, San Raffaele Scientific Institute
- MSc
- State University of Lecce-Italy, Biology
Research
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Overview
Medical Research Interests
ORCID
0009-0002-2936-4708
Research at a Glance
Yale Co-Authors
Publications Timeline
Research Interests
Pasko Rakic, MD, PhD
Suel-Kee Kim
Alvaro Duque, PhD
Nenad Sestan, MD, PhD
Anita Huttner, MD
Kevin Gobeske, MPH, PhD, MD
Neural Stem Cells
Neurons
Embryo, Mammalian
Induced Pluripotent Stem Cells
Synapses
Mental Disorders
Publications
2026
NeMO Analytics: a compendium of transcriptomic data for the exploration of neocortical development
Sonthalia S, Herb B, Adkins R, Orvis J, Li G, Liao X, Yu Q, Blanco X, Casella A, Liu J, Stein-O’Brien G, Caffo B, Hertzano R, Mahurkar A, Xu J, Gillis J, Werner J, Ma S, Kim S, Micali N, Sestan N, Rakic P, Santpere G, Ament S, Colantuoni C. NeMO Analytics: a compendium of transcriptomic data for the exploration of neocortical development. Nature Neuroscience 2026, 1-14. PMID: 41882195, DOI: 10.1038/s41593-026-02204-4.Peer-Reviewed Original ResearchAltmetricConceptsNeocortical developmentRadial gliaIn vivo developmentTranscriptome dataIn vitro modelVentricular progenitorsExcitatory neuronsNeocortical neurogenesisNeuronal maturationTranscriptomic programsIn vitroPeak expressionProtracted maturationCerebral organoidsTranscriptome dynamicsHuman dataTranscription factorsHigh-resolution in utero SV2A PET imaging of the nonhuman primate brain using the NeuroEXPLORER.
Mehta S, Sun H, Micali N, Holden D, Fowles K, Rossano S, Zhang J, Ma C, Han P, Lee W, Duque A, Rakic P, Groman S, Carson R, Scheinost D, Toyonaga T. High-resolution in utero SV2A PET imaging of the nonhuman primate brain using the NeuroEXPLORER. Journal Of Cerebral Blood Flow And Metabolism : Official Journal Of The International Society Of Cerebral Blood Flow And Metabolism 2026, 271678x261429044. PMID: 41823342, PMCID: PMC12987752, DOI: 10.1177/0271678x261429044.Peer-Reviewed Original ResearchConceptsDistribution volume ratioMaternal brainIn vivo markerFetal brainPET imagingSynaptic developmentPregnant rhesus macaquesRegional distribution volume ratiosMarker of synaptic densitySynaptic vesicle glycoprotein 2APET scannerNon-invasive toolNonhuman primate brainPET quantificationBrain-dedicated PET scannersNeuroExplorerRhesus macaquesSynaptic densityBiograph mCTOccipital lobeOccipital regionBrainMotion correctionPETPrimate brainHuman-specific features of the cerebellum and ZP2-regulated synapse development
Kim S, Cherskov A, Sindhwani A, Choi S, Kim H, Li M, Zhang M, Mato-Blanco X, Liu Y, Micali N, Young D, Estacion M, Zhang Y, Ruiz-Jiménez J, Nadkarni A, Luria V, Sindhu S, Chatterjee I, Shibata A, Liang D, Cho H, Park S, Spajic A, Kovner R, Glavan M, Chen R, Risgaard R, Li X, Pochareddy S, Karger A, Huttner A, Morozov Y, Daadi E, Colantuoni C, Gobeske K, Ely J, Hof P, Daadi M, Sherwood C, Duque A, Ma S, Sousa A, Waxman S, Rakic P, Santpere G, Sanders S, Sestan N. Human-specific features of the cerebellum and ZP2-regulated synapse development. Cell 2026, 189: 1802-1819.e28. PMID: 41819103, DOI: 10.1016/j.cell.2026.02.014.Peer-Reviewed Original ResearchAltmetricMeSH Keywords and ConceptsConceptsHuman granule cellsZona pellucida glycoprotein 2Granule cellsNeuronal electrophysiological activityAdult cerebellar cortexSynapse regulationCognitive functionGlomerular synapsesNon-human primatesCerebellar cortexMotor coordinationMossy fibersGamete interactionGlycoprotein 2Human brainSynapse developmentSynaptic proteinsElectrophysiological activityHuman cerebellumEvolutionary developmentHuman-specific featuresCo-optionCerebellumHuman adaptationChromatin accessibility profiles
2025
Radiofrequency regulates the BET-mediated pathways in radial glia differentiation in human cortical development
Cakir B, Tanaka Y, Choe M, Kiral F, Kim J, Micali N, Kang Y, Dharmadhikari B, Patterson B, Yang W, Cho Y, Xiang Y, Zhong M, Lee S, Patra P, Rakic P, Park I. Radiofrequency regulates the BET-mediated pathways in radial glia differentiation in human cortical development. Cell Reports 2025, 44: 116238. PMID: 40997800, PMCID: PMC12959456, DOI: 10.1016/j.celrep.2025.116238.Peer-Reviewed Original ResearchAltmetricMeSH Keywords and ConceptsConceptsHuman cortical organoidsHuman embryonic stem cellsExpression of human endogenous retrovirusesBrain developmentStem Cell Self-RenewalRadial glia progenitorsNeural Stem Cell Self-RenewalCell Self-RenewalHuman cortical developmentHuman endogenous retrovirusesEmbryonic stem cellsStem cell identityCortical developmentGlia progenitorsPrenatal stressSelf-RenewalStem cellsCortical organoidsNon-genetic factorsGlia differentiationDevelopmental defectsEndogenous retrovirusesBrainRadiofrequencyDelayed differentiationHuman-specific features of the cerebellum and ZP2-regulated synapse development.
Kim SK, Cherskov A, Sindhwani A, Choi SH, Kim H, Li ML, Zhang M, Mato-Blanco X, Liu Y, Micali N, Young DM, Estacion M, Zhang Y, Ruiz-Jiménez JM, Nadkarni A, Luria V, Sindhu SK, Chatterjee I, Shibata A, Liang D, Cho H, Park S, Spajic A, Kovner R, Glavan M, Chen RJ, Risgaard RD, Li X, Pochareddy S, Karger A, Huttner A, Morozov YM, Daadi EW, Colantuoni C, Gobeske KT, Ely JJ, Hof PR, Daadi MM, Sherwood CC, Duque A, Ma S, Sousa AMM, Waxman SG, Rakic P, Santpere G, Sanders SJ, Sestan N. Human-specific features of the cerebellum and ZP2-regulated synapse development. BioRxiv 2025 PMID: 40964325, DOI: 10.1101/2025.09.08.674970.Peer-Reviewed Original ResearchEarly developmental origins of cortical disorders modeled in human neural stem cells
Mato-Blanco X, Kim S, Jourdon A, Ma S, Choi S, Giani A, Paredes M, Tebbenkamp A, Liu F, Duque A, Vaccarino F, Sestan N, Colantuoni C, Rakic P, Santpere G, Micali N. Early developmental origins of cortical disorders modeled in human neural stem cells. Nature Communications 2025, 16: 6347. PMID: 40634286, PMCID: PMC12241556, DOI: 10.1038/s41467-025-61316-w.Peer-Reviewed Original ResearchCitationsAltmetricMeSH Keywords and ConceptsConceptsSingle-cell transcriptomicsNeural stem cellsNeural stem cell lineage commitmentGene regulatory networksEarly developmental originHuman neural stem cellsRegulatory networksExpression dynamicsRisk genesStem cellsCortical disordersTransition in vitroTelencephalic developmentEarly phaseGene dysfunctionLineage commitmentCell trajectoriesHuman corticogenesisHuman brain dysfunctionGenesNSCs in vitroMultiple diseasesIn vivoBrain dysfunctionCorticogenesisSpatial transcriptomics reveals human cortical layer and area specification
Qian X, Coleman K, Jiang S, Kriz A, Marciano J, Luo C, Cai C, Manam M, Caglayan E, Lai A, Exposito-Alonso D, Otani A, Ghosh U, Shao D, Andersen R, Neil J, Johnson R, LeFevre A, Hecht J, Micali N, Sestan N, Rakic P, Miller M, Sun L, Stringer C, Li M, Walsh C. Spatial transcriptomics reveals human cortical layer and area specification. Nature 2025, 644: 153-163. PMID: 40369074, PMCID: PMC12328223, DOI: 10.1038/s41586-025-09010-1.Peer-Reviewed Original ResearchCitationsAltmetricConceptsNeuronal subtypesMid-gestationHuman fetal cortexExcitatory neuron subtypesCortical layersLayer 4 neuronsCortical areasHuman cortical developmentGestational weeksFetal cortexSingle-nucleus RNA sequencingCortical developmentCerebral cortexSingle-cell transcriptomic studiesHuman cerebral cortexDevelopmental time pointsLaminar distributionAreal specificationCortical arealizationTime pointsSubtypesCortexVisual cortexSingle-cell resolutionCytoarchitectural development
2024
Individual variation in the emergence of anterior-to-posterior neural fates from human pluripotent stem cells
Kim S, Seo S, Stein-O’Brien G, Jaishankar A, Ogawa K, Micali N, Luria V, Karger A, Wang Y, Kim H, Hyde T, Kleinman J, Voss T, Fertig E, Shin J, Bürli R, Cross A, Brandon N, Weinberger D, Chenoweth J, Hoeppner D, Sestan N, Colantuoni C, McKay R. Individual variation in the emergence of anterior-to-posterior neural fates from human pluripotent stem cells. Stem Cell Reports 2024, 19: 1336-1350. PMID: 39151428, PMCID: PMC11411333, DOI: 10.1016/j.stemcr.2024.07.004.Peer-Reviewed Original ResearchCitationsAltmetricConceptsHuman pluripotent stem cellsEarly mammalian developmentConsequences of variationPluripotent stem cellsTranscriptomic variationMammalian developmentTranscriptomic patternsTranscriptomic traitsReplicate linesMesendodermal lineagesNeural fateAdult tissuesLineagesHindbrain fateTranscriptional signatureTranscriptomic signaturesEarly eventLineage biasHuman pluripotent stem cell linesStem cellsFateIndividual variationAnterior to posterior structuresEpigenetic originCellsA Curated Compendium of Transcriptomic Data for the Exploration of Neocortical Development.
Sonthalia S, Li G, Blanco XM, Casella A, Liu J, Stein-O'Brien G, Caffo B, Adkins S, Orvis J, Hertzano R, Mahurkar A, Gillis JA, Werner J, Ma S, Micali N, Sestan N, Rakic P, Baro GS, Ament SA, Colantuoni C. A Curated Compendium of Transcriptomic Data for the Exploration of Neocortical Development. BioRxiv 2024 PMID: 38464021, DOI: 10.1101/2024.02.26.581612.Peer-Reviewed Original ResearchEarly Developmental Origins of Cortical Disorders Modeled in Human Neural Stem Cells.
Mato-Blanco X, Kim SK, Jourdon A, Ma S, Tebbenkamp ATN, Liu F, Duque A, Vaccarino FM, Sestan N, Colantuoni C, Rakic P, Santpere G, Micali N. Early Developmental Origins of Cortical Disorders Modeled in Human Neural Stem Cells. BioRxiv 2024 PMID: 38915580, DOI: 10.1101/2024.06.14.598925.Peer-Reviewed Original Research
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activity Cerebral Cortex
07/01/2017 - PresentJournal ServiceReviewerDetailsOfficial Peer Revieweractivity Nature Communications
2026 - PresentJournal ServiceReviewer
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- November 10, 2025Source: Yale Alumni Magazine
Back to the beginning
- September 10, 2025Source: Yale News
Insights & Outcomes: Origins of Mental Illness, Fast Gas for a Black Hole
- November 25, 2024
Yale Center for the Science of Cannabis and Cannabinoids Announces Inaugural Pilot Award Winners
- August 01, 2024Source: Brain patterning in utero may be implicated in autism, other conditions
Brain patterning in utero may be implicated in autism, other conditions
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