Zezhen Du
Postdoctoral AssociateAbout
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Featured Publications
A comprehensive benchmark of graph-based genetic variant genotyping algorithms on plant genomes for creating an accurate ensemble pipeline
Du Z, He J, Jiao W. A comprehensive benchmark of graph-based genetic variant genotyping algorithms on plant genomes for creating an accurate ensemble pipeline. Genome Biology 2024, 25: 91. PMID: 38589937, PMCID: PMC11003132, DOI: 10.1186/s13059-024-03239-1.Peer-Reviewed Original ResearchSynDiv: An efficient tool for chromosome collinearity-based population genomics analyses
Du Z, He J, Jiao W. SynDiv: An efficient tool for chromosome collinearity-based population genomics analyses. Plant Communications 2024, 5: 101071. PMID: 39182168, PMCID: PMC11671753, DOI: 10.1016/j.xplc.2024.101071.Peer-Reviewed Original ResearchCharacterization of the PHOSPHATE RESPONSE 2-dependent and -independent Pi-starvation response secretome in rice
Du Z, Deng S, Wu Z, Cai H, Xu F, Shi L, Wang S, Ding G, Wang C. Characterization of the PHOSPHATE RESPONSE 2-dependent and -independent Pi-starvation response secretome in rice. Journal Of Experimental Botany 2022, 73: 6955-6970. PMID: 35994773, DOI: 10.1093/jxb/erac342.Peer-Reviewed Original ResearchGenome-wide analysis of haloacid dehalogenase genes reveals their function in phosphate starvation responses in rice
Du Z, Deng S, Wu Z, Wang C. Genome-wide analysis of haloacid dehalogenase genes reveals their function in phosphate starvation responses in rice. PLOS ONE 2021, 16: e0245600. PMID: 33481906, PMCID: PMC7822558, DOI: 10.1371/journal.pone.0245600.Peer-Reviewed Original ResearchVarigraph: An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes
Du Z, He J, Xiao P, Hu J, Yang N, Jiao W. Varigraph: An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes. Molecular Plant 2025, 18: 1587-1601. PMID: 40770875, DOI: 10.1016/j.molp.2025.08.001.Peer-Reviewed Original Research
2025
Pan-S-locus analysis reveals insights into the origin and evolution of self-incompatibility in the orange subfamily
Hu J, Du Z, Liu C, Wen H, Liu C, Chen P, Shi C, Ye J, Ji Q, Deng X, Bosch M, Lin Z, Jiao W, Chai L. Pan-S-locus analysis reveals insights into the origin and evolution of self-incompatibility in the orange subfamily. Genome Biology 2025, 26: 344. PMID: 41057937, PMCID: PMC12506349, DOI: 10.1186/s13059-025-03817-x.Peer-Reviewed Original ResearchPlant graph-based pangenomics: techniques, applications, and challenges
Du Z, He J, Jiao W. Plant graph-based pangenomics: techniques, applications, and challenges. ABIOTECH 2025, 6: 361-376. PMID: 40641648, PMCID: PMC12237840, DOI: 10.1007/s42994-025-00206-7.Peer-Reviewed Reviews, Practice Guidelines, Standards, and Consensus StatementsSomatic variations in the meiosis‐specific gene CrMER3 confer seedlessness in a citrus bud sport
Fan Y, Du Z, He X, Liu Z, Zhuang J, Xiao G, Duan Y, Tan F, Xie K, Jiao W, Zhang F, Yang C, Guo W, Wu X. Somatic variations in the meiosis‐specific gene CrMER3 confer seedlessness in a citrus bud sport. Journal Of Integrative Plant Biology 2025, 67: 1649-1664. PMID: 39981730, DOI: 10.1111/jipb.13872.Peer-Reviewed Original Research
2024
A rare inter-haplotypic recombination at the S-locus contributed to the loss of self-incompatibility in trifoliate orange
Hu J, Guo F, Du Z, Chen P, Shi C, Zhang J, Ye J, Deng X, Larkin R, Jiao W, Lin Z, Bosch M, Chai L. A rare inter-haplotypic recombination at the S-locus contributed to the loss of self-incompatibility in trifoliate orange. Plant Communications 2024, 5: 100940. PMID: 38715365, PMCID: PMC11412923, DOI: 10.1016/j.xplc.2024.100940.Peer-Reviewed Original Research
2023
Transposable elements cause the loss of self‐incompatibility in citrus
Hu J, Liu C, Du Z, Guo F, Song D, Wang N, Wei Z, Jiang J, Cao Z, Shi C, Zhang S, Zhu C, Chen P, Larkin R, Lin Z, Xu Q, Ye J, Deng X, Bosch M, Franklin‐Tong V, Chai L. Transposable elements cause the loss of self‐incompatibility in citrus. Plant Biotechnology Journal 2023, 22: 1113-1131. PMID: 38038155, PMCID: PMC11022811, DOI: 10.1111/pbi.14250.Peer-Reviewed Original Research
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