Dhananjay Bhaskar, PhD
Postdoctoral AssociateAbout
Research
Publications
Featured Publications
Multiscale geometric and topological analyses for characterizing and predicting immune responses from single cell data
Venkat A, Bhaskar D, Krishnaswamy S. Multiscale geometric and topological analyses for characterizing and predicting immune responses from single cell data. Trends In Immunology 2023, 44: 551-563. PMID: 37301677, DOI: 10.1016/j.it.2023.05.003.Peer-Reviewed Original ResearchCell cycle controls long-range calcium signaling in the regenerating epidermis
Moore J, Bhaskar D, Gao F, Matte-Martone C, Du S, Lathrop E, Ganesan S, Shao L, Norris R, Sanz N, Annusver K, Kasper M, Cox A, Hendry C, Rieck B, Krishnaswamy S, Greco V. Cell cycle controls long-range calcium signaling in the regenerating epidermis. Journal Of Cell Biology 2023, 222: e202302095. PMID: 37102999, PMCID: PMC10140546, DOI: 10.1083/jcb.202302095.Peer-Reviewed Original ResearchCurrent trends in artificial intelligence in reproductive endocrinology
Bhaskar D, Chang TA, Wang S. Current trends in artificial intelligence in reproductive endocrinology. Current Opinion In Obstetrics & Gynecology 2022, 34: 159-163. PMID: 35895955, DOI: 10.1097/gco.0000000000000796.Peer-Reviewed Original ResearchTopological data analysis of collective and individual epithelial cells using persistent homology of loops
Bhaskar D, Zhang W, Wong I. Topological data analysis of collective and individual epithelial cells using persistent homology of loops. Soft Matter 2021, 17: 4653-4664. PMID: 33949592, PMCID: PMC8276269, DOI: 10.1039/d1sm00072a.Peer-Reviewed Original ResearchAnalyzing collective motion with machine learning and topology
Bhaskar D, Manhart A, Milzman J, Nardini JT, Storey KM, Topaz CM, Ziegelmeier L. Analyzing collective motion with machine learning and topology. Chaos An Interdisciplinary Journal Of Nonlinear Science 2019, 29: 123125. PMID: 31893635, PMCID: PMC7027427, DOI: 10.1063/1.5125493.Peer-Reviewed Original ResearchSupervised machine learning methodsMachine learning methodsTopological data analysisCollective motionMachine learningLearning methodsOrder parameterSimulation dataTopological approachPersistent homologyTraditional order parametersPrior knowledgeMachineCollective behaviorModel parametersData analysisLarge librariesNumerical simulationsTopologyMultiple scalesMotionTime seriesLearningDifferent typesParametersMolecular Graph Generation via Geometric Scattering
Bhaskar D, Grady J, Castro E, Perlmutter M, Krishnaswamy S. Molecular Graph Generation via Geometric Scattering. 2022, 00: 1-6. DOI: 10.1109/mlsp55214.2022.9943379.Peer-Reviewed Original ResearchMotility-limited aggregation of mammary epithelial cells into fractal-like clusters
Leggett SE, Neronha ZJ, Bhaskar D, Sim JY, Perdikari TM, Wong IY. Motility-limited aggregation of mammary epithelial cells into fractal-like clusters. Proceedings Of The National Academy Of Sciences Of The United States Of America 2019, 116: 17298-17306. PMID: 31413194, PMCID: PMC6717304, DOI: 10.1073/pnas.1905958116.Peer-Reviewed Original ResearchCoupling mechanical tension and GTPase signaling to generate cell and tissue dynamics
Zmurchok C, Bhaskar D, Edelstein-Keshet L. Coupling mechanical tension and GTPase signaling to generate cell and tissue dynamics. Physical Biology 2018, 15: 046004. PMID: 29473547, DOI: 10.1088/1478-3975/aab1c0.Peer-Reviewed Original ResearchSwarming Migration of Co-attracting Mesenchymal Cells into Fractal-Like Epithelial Clusters
Leggett S, Neronha Z, Bhaskar D, Perdikari T, Wong I. Swarming Migration of Co-attracting Mesenchymal Cells into Fractal-Like Epithelial Clusters. Biophysical Journal 2018, 114: 513a-514a. DOI: 10.1016/j.bpj.2017.11.2806.Peer-Reviewed Original ResearchPolarization and migration in the zebrafish posterior lateral line system
Knutsdottir H, Zmurchok C, Bhaskar D, Palsson E, Nogare D, Chitnis A, Edelstein-Keshet L. Polarization and migration in the zebrafish posterior lateral line system. PLOS Computational Biology 2017, 13: e1005451. PMID: 28369079, PMCID: PMC5393887, DOI: 10.1371/journal.pcbi.1005451.Peer-Reviewed Original ResearchConceptsPosterior lateral line primordiumZebrafish posterior lateral line systemCell-cell adhesionLateral line primordiumCollective cell migrationPosterior lateral line systemCell-based simulationsMutant phenotypeZebrafish embryosCell divisionFGF ligandsLateral line systemCell migrationTrailing cellsSensory structuresObserved motilityChemotaxisCellsImportant roleCXCL12aPrimordiaAdhesionEmbryosMigrationPhenotype