2024
Neurostructural subgroup in 4291 individuals with schizophrenia identified using the subtype and stage inference algorithm
Jiang Y, Luo C, Wang J, Palaniyappan L, Chang X, Xiang S, Zhang J, Duan M, Huang H, Gaser C, Nemoto K, Miura K, Hashimoto R, Westlye L, Richard G, Fernandez-Cabello S, Parker N, Andreassen O, Kircher T, Nenadić I, Stein F, Thomas-Odenthal F, Teutenberg L, Usemann P, Dannlowski U, Hahn T, Grotegerd D, Meinert S, Lencer R, Tang Y, Zhang T, Li C, Yue W, Zhang Y, Yu X, Zhou E, Lin C, Tsai S, Rodrigue A, Glahn D, Pearlson G, Blangero J, Karuk A, Pomarol-Clotet E, Salvador R, Fuentes-Claramonte P, Garcia-León M, Spalletta G, Piras F, Vecchio D, Banaj N, Cheng J, Liu Z, Yang J, Gonul A, Uslu O, Burhanoglu B, Uyar Demir A, Rootes-Murdy K, Calhoun V, Sim K, Green M, Quidé Y, Chung Y, Kim W, Sponheim S, Demro C, Ramsay I, Iasevoli F, de Bartolomeis A, Barone A, Ciccarelli M, Brunetti A, Cocozza S, Pontillo G, Tranfa M, Park M, Kirschner M, Georgiadis F, Kaiser S, Van Rheenen T, Rossell S, Hughes M, Woods W, Carruthers S, Sumner P, Ringin E, Spaniel F, Skoch A, Tomecek D, Homan P, Homan S, Omlor W, Cecere G, Nguyen D, Preda A, Thomopoulos S, Jahanshad N, Cui L, Yao D, Thompson P, Turner J, van Erp T, Cheng W, Feng J. Neurostructural subgroup in 4291 individuals with schizophrenia identified using the subtype and stage inference algorithm. Nature Communications 2024, 15: 5996. PMID: 39013848, PMCID: PMC11252381, DOI: 10.1038/s41467-024-50267-3.Peer-Reviewed Original ResearchConceptsGray matter changesDisorder constructsEnlarged striatumPsychiatric conditionsMental disordersSubcortical regionsSchizophreniaBiological foundationsMatter changesBrain imagingStriatumDisordersBiological factorsIndividualsSubtypesHealthy subjectsCross-sectional brain imagingHippocampusTemporal trajectoriesInternational cohortSubgroup 2Subgroup 1SubgroupsA new transfer entropy method for measuring directed connectivity from complex-valued fMRI data
Li W, Lin Q, Zhang C, Han Y, Calhoun V. A new transfer entropy method for measuring directed connectivity from complex-valued fMRI data. Frontiers In Neuroscience 2024, 18: 1423014. PMID: 39050665, PMCID: PMC11266018, DOI: 10.3389/fnins.2024.1423014.Peer-Reviewed Original ResearchFunctional magnetic resonance imagingFMRI dataBrain regionsAnatomical Automatic LabelingTransfer entropyFunctional magnetic resonance imaging dataConnectivity of brain regionsFrontal-parietal regionsConsistent with previous findingsSignificant group differencesRight frontal-parietal regionPartial transfer entropyPredicting mental disordersMental disordersParietal regionsGroup differencesMagnitude effectExperimental fMRI dataDirectional connectivityComplex-valued fMRI dataSchizophreniaMagnetic resonance imagingComplex-valued approachEntropyMagnitude dataNeuroimage Analysis Methods and Artificial Intelligence Techniques for Reliable Biomarkers and Accurate Diagnosis of Schizophrenia: Achievements Made by Chinese Scholars Around the Past Decade
Du Y, Niu J, Xing Y, Li B, Calhoun V. Neuroimage Analysis Methods and Artificial Intelligence Techniques for Reliable Biomarkers and Accurate Diagnosis of Schizophrenia: Achievements Made by Chinese Scholars Around the Past Decade. Schizophrenia Bulletin 2024, sbae110. PMID: 38982882, DOI: 10.1093/schbul/sbae110.Peer-Reviewed Original ResearchArtificial intelligenceSemi-supervised learning methodArtificial intelligence techniquesAccurate diagnosis of SZMultimodal fusionAccurate diagnosis of schizophreniaIntelligence techniquesAI methodsLearning methodsDiagnosis of SZMental disordersSelection methodUnsupervised clusteringMagnetic resonance imagingBiomarker extractionDiagnosis of schizophreniaDouble Functionally Independent Primitives Provide Disorder Specific Fingerprints of Mental Illnesses
Soleimani N, Pearlson G, Iraji A, Calhoun V. Double Functionally Independent Primitives Provide Disorder Specific Fingerprints of Mental Illnesses. 2024, 00: 1-4. DOI: 10.1109/isbi56570.2024.10635116.Peer-Reviewed Original ResearchAutism spectrum disorderMental illnessBipolar disorderMental disordersManifestations of mental illnessAssociated with mental illnessFunctional network connectivityFunctional network connectivity patternsNetwork connectivity patternsDisorder-specificDepressive disorderNeural underpinningsSpectrum disorderPsychological disordersNeuroimaging techniquesConnectivity patternsDisordersSchizophreniaHealthy controlsIllnessBrainFunctional changesMDDAutismNetwork connectivitySpatial Sequence Attention Network for Schizophrenia Classification from Structural Brain MR Images
Shaik N, Cherukuri T, Calhoun V, Ye D. Spatial Sequence Attention Network for Schizophrenia Classification from Structural Brain MR Images. 2024, 00: 1-5. DOI: 10.1109/isbi56570.2024.10635528.Peer-Reviewed Original ResearchCognitive abilitiesStructural MRIAttention mechanismSchizophrenia classificationChronic mental disordersIndividual cognitive abilitiesTransfer learning paradigmDeep learning methodologyMental disordersSchizophreniaFeature mapsFeature representationConvolutional blocksAttention networkBrain MR imagesLearning paradigmSocial interactionClassification of individualsStructural brain MR imagesGray matterLearning methodologyExcitable networksClinical datasetsBrainManual observationDynamic functional connectivity in anorexia nervosa: alterations in states of low connectivity and state transitions
Boehm I, Mennigen E, Geisler D, Poller N, Gramatke K, Calhoun V, Roessner V, King J, Ehrlich S. Dynamic functional connectivity in anorexia nervosa: alterations in states of low connectivity and state transitions. Journal Of Child Psychology And Psychiatry 2024, 65: 1299-1310. PMID: 38480007, DOI: 10.1111/jcpp.13970.Peer-Reviewed Original ResearchConceptsAnorexia nervosaFunctional connectivityResting state functional connectivityResting-state functional MRI dataInternalizing mental disordersAssociated with preoccupationOnset of anorexia nervosaFunctional MRI dataFemale healthy controlsHealthy controlsDynamic functional connectivityDynamics of functional connectivityTemporal dynamics of functional connectivityFunctional connectivity statesMental disordersStatic analytical approachesGroup differencesNervosaFractional timeMRI dataAdolescentsConnectivity statesFemale patientsClinical featuresTemporal dynamicsMore reliable biomarkers and more accurate prediction for mental disorders using a label-noise filtering-based dimensional prediction method
Xing Y, van Erp T, Pearlson G, Kochunov P, Calhoun V, Du Y. More reliable biomarkers and more accurate prediction for mental disorders using a label-noise filtering-based dimensional prediction method. IScience 2024, 27: 109319. PMID: 38482500, PMCID: PMC10933544, DOI: 10.1016/j.isci.2024.109319.Peer-Reviewed Original ResearchDiagnosis of mental disordersMental disordersDiagnostic labelsIntegration of neuroimagingSchizophrenia patientsNeuroimaging measuresNeuroimaging perspectiveFMRI dataStable abnormalitiesNeuroimagingDisordersHealthy controlsIndependent subjectsSchizophreniaFMRIDimensional predictionsSubjectsAccurate diagnosisClassification accuracy
2023
Dynamic functional network connectivity based on spatial source phase maps of complex-valued fMRI data: Application to schizophrenia
Li W, Lin Q, Zhao B, Kuang L, Zhang C, Han Y, Calhoun V. Dynamic functional network connectivity based on spatial source phase maps of complex-valued fMRI data: Application to schizophrenia. Journal Of Neuroscience Methods 2023, 403: 110049. PMID: 38151187, DOI: 10.1016/j.jneumeth.2023.110049.Peer-Reviewed Original ResearchConceptsSchizophrenia patientsFMRI dataFunctional network connectivityHealthy controlsDynamic functional network connectivityPsychotic diagnosesMental disordersSchizophreniaComplex-valued fMRI dataPotential imaging biomarkersDetect functional alterationsFMRIState transitionsNetwork connectivityPhase informationFunctional alterationsComplex valuesBrain informationMutual informationDynamicsPhaseExtraction of One Time Point Dynamic Group Features via Tucker Decomposition of Multi-subject FMRI Data: Application to Schizophrenia
Han Y, Lin Q, Kuang L, Hao Y, Li W, Gong X, Calhoun V. Extraction of One Time Point Dynamic Group Features via Tucker Decomposition of Multi-subject FMRI Data: Application to Schizophrenia. Communications In Computer And Information Science 2023, 1963: 518-527. DOI: 10.1007/978-981-99-8138-0_41.Peer-Reviewed Original ResearchAmplitude of low frequency fluctuationsFMRI dataLow frequency fluctuationsSchizophrenia groupHealthy controlsMulti-subject fMRI dataInferior parietal lobuleProperties of brain functionParietal lobuleFMRI-dataMental disordersSchizophreniaBrain functionActivity differencesFrequency fluctuationsTwo-sample t-testSliding-window techniqueTucker decompositionA Deep Learning Approach for Psychosis Spectrum Label Noise Detection from Multimodal Neuroimaging Data
Rokham H, Falakshahi H, Calhoun V. A Deep Learning Approach for Psychosis Spectrum Label Noise Detection from Multimodal Neuroimaging Data. Annual International Conference Of The IEEE Engineering In Medicine And Biology Society (EMBC) 2023, 00: 1-4. PMID: 38082903, DOI: 10.1109/embc40787.2023.10339949.Peer-Reviewed Original ResearchConceptsStructural MRI dataResting-state functional MRI dataFunctional MRI dataFunctional magnetic resonance imaging dataMRI dataMagnetic resonance imaging dataSchizophrenia patientsFunctional connectivity featuresBrain imaging modalitiesMental disordersNeuroimaging dataNeuroimaging techniquesBorderline subjectsHealthy control groupSchizophrenia datasetSchizophreniaConnectivity featuresBrainPsychosisMoodNosologyControl groupDisordersLabel noiseSubjectsNew Interpretable Patterns and Discriminative Features from Brain Functional Network Connectivity using Dictionary Learning
Ghayem F, Yang H, Kantar F, Kim S, Calhoun V, Adali T. New Interpretable Patterns and Discriminative Features from Brain Functional Network Connectivity using Dictionary Learning. 2023, 00: 1-5. DOI: 10.1109/icassp49357.2023.10096473.Peer-Reviewed Original ResearchDictionary learningIndependent component analysisLearned atomsDiscovery of hidden informationNetwork connectivityMulti-subject functional magnetic resonance imagingFunctional magnetic resonance imagingFunctional network connectivityDiscriminative featuresFeature vectorHidden informationEffective classificationSZ groupHealthy controlsResting-state fMRI dataExperimental resultsICA resultsDictionaryBrain functional network connectivityBrain networksMental disordersFMRI dataLearningRepresentationMental diseases