2024
Expression of model ion channel currents generated using neuron in silico software in real time using dynamic clamp
Acharya S, Panama B, Korbel L, Nilsson L, Hines M, Carnevale N, Bett G, Rasmusson R, Nowak M. Expression of model ion channel currents generated using neuron in silico software in real time using dynamic clamp. Biophysical Journal 2024, 123: 532a-533a. DOI: 10.1016/j.bpj.2023.11.3218.Peer-Reviewed Original Research
2023
Simulations predict differing phase responses to excitation vs. inhibition in theta-resonant pyramidal neurons
Kelley C, Antic S, Carnevale N, Kubie J, Lytton W. Simulations predict differing phase responses to excitation vs. inhibition in theta-resonant pyramidal neurons. Journal Of Neurophysiology 2023, 130: 910-924. PMID: 37609720, PMCID: PMC10648938, DOI: 10.1152/jn.00160.2023.Peer-Reviewed Original ResearchInput of expressed hERG current into a complex neuron in silico cardiac atrial cell: Implications for cardiotoxicity screening
Nowak M, Korbel L, Kane A, Panama B, Hines M, Carnevale N, Bett G, Rasmusson R. Input of expressed hERG current into a complex neuron in silico cardiac atrial cell: Implications for cardiotoxicity screening. Biophysical Journal 2023, 122: 382a. DOI: 10.1016/j.bpj.2022.11.2097.Peer-Reviewed Original Research
2022
Interfacing a real-time dynamic clamp system with neuron simulation software in living cells
Nowak M, Korbel L, Kane A, Panama B, Hines M, Carnevale N, Bett G, Rasmusson R. Interfacing a real-time dynamic clamp system with neuron simulation software in living cells. Biophysical Journal 2022, 121: 391a. DOI: 10.1016/j.bpj.2021.11.818.Peer-Reviewed Original Research
2019
Web of Trust Tool for Gateway User Vetting
Yoshimoto K, Carnevale N, Sivagnanam S, Majumdar A, Miller M. Web of Trust Tool for Gateway User Vetting. 2019, 1-5. DOI: 10.1145/3332186.3332221.Peer-Reviewed Original Research
2018
The Neuroscience Gateway
Sivagnanam S, Yoshimoto K, Carnevale N, Majumdar A. The Neuroscience Gateway. 2018, 1-7. DOI: 10.1145/3219104.3219139.Peer-Reviewed Original ResearchNeuroscience GatewayProgrammatic accessComputational neuroscientistsFront-end user interfaceEuropean Human Brain ProjectEnd-user interfaceHuman Brain ProjectGateway softwareHPC resourcesUser interfaceNeuroscience communityBackend architectureExtreme ScienceDissemination platformBrain ProjectUsage modesExperimental neuroscientistsUsersCompetitive peer review processHigh performanceGatewayArchitectureNeuroscience projectsWebResources
2008
Functional Structure of the Mitral Cell Dendritic Tuft in the Rat Olfactory Bulb
Djurisic M, Popovic M, Carnevale N, Zecevic D. Functional Structure of the Mitral Cell Dendritic Tuft in the Rat Olfactory Bulb. Journal Of Neuroscience 2008, 28: 4057-4068. PMID: 18400905, PMCID: PMC6670455, DOI: 10.1523/jneurosci.5296-07.2008.Peer-Reviewed Original ResearchConceptsMitral cellsDendritic tuftsOlfactory bulbGlomerular tuftPrincipal projection neuronsVoltage-sensitive dye recordingRat olfactory bulbSubthreshold synaptic potentialsPrimary dendritesProjection neuronsSynaptic potentialsSame neuronsEPSPsElectrical compartmentsDendritic branchesAnatomical studySynchronized activationDendritic surfaceNeuronsSynapsesCell typesAverage rangePassive electrical propertiesCellsTufts2 The Neuron Simulation Environment in Epilepsy Research
Carnevale N, Hines M. 2 The Neuron Simulation Environment in Epilepsy Research. 2008, 18-33. DOI: 10.1016/b978-012373649-9.50005-3.Peer-Reviewed Original ResearchLigand-dependent ion channelsIon accumulationExtracellular ion accumulationIon channelsCell membraneSingle cellsBiophysical propertiesBiophysical mechanismsSubcellular mechanismsExtracellular stimulationMechanistic modelStochastic gatingElectrical fieldCellsDomainAccumulationBiologyNeuronsMechanismChemical reactionsLocal concentrationSpecial programming languageComputational detailsMembraneIndividual neurons
2006
The NEURON Book
Carnevale N, Hines M. The NEURON Book. 2006 DOI: 10.1017/cbo9780511541612.Peer-Reviewed Original Research
2004
ModelDB: A Database to Support Computational Neuroscience
Hines ML, Morse T, Migliore M, Carnevale NT, Shepherd GM. ModelDB: A Database to Support Computational Neuroscience. Journal Of Computational Neuroscience 2004, 17: 7-11. PMID: 15218350, PMCID: PMC3732827, DOI: 10.1023/b:jcns.0000023869.22017.2e.Peer-Reviewed Original ResearchDiscrete event simulation in the NEURON environment
Hines M, Carnevale N. Discrete event simulation in the NEURON environment. Neurocomputing 2004, 58: 1117-1122. DOI: 10.1016/j.neucom.2004.01.175.Peer-Reviewed Original Research
1999
Passive Normalization of Synaptic Integration Influenced by Dendritic Architecture
Jaffe D, Carnevale N. Passive Normalization of Synaptic Integration Influenced by Dendritic Architecture. Journal Of Neurophysiology 1999, 82: 3268-3285. PMID: 10601459, DOI: 10.1152/jn.1999.82.6.3268.Peer-Reviewed Original Research
1997
Comparative Electrotonic Analysis of Three Classes of Rat Hippocampal Neurons
Carnevale N, Tsai K, Claiborne B, Brown T. Comparative Electrotonic Analysis of Three Classes of Rat Hippocampal Neurons. Journal Of Neurophysiology 1997, 78: 703-720. PMID: 9307106, DOI: 10.1152/jn.1997.78.2.703.Peer-Reviewed Original ResearchConceptsDendritic fieldsPyramidal cellsApical dendritesGranule cellsCA3c pyramidal cellsPrimary apical dendritesCA3 pyramidal neuronsSchaffer collateral synapsesCA1 pyramidal cellsRat hippocampal neuronsMossy fiber inputsCollateral synapsesPyramidal neuronsAnatomic distributionCA1 neuronsPrincipal neuronsBasilar dendritesDentate gyrusThorny excrescencesRat hippocampusDistal branchesHippocampal neuronsCA3c neuronsSynaptic currentsAnatomic distances
1995
Machines That Remember
Carnevale N, Claiborne B. Machines That Remember. PsycCRITIQUES 1995, 40: 267-268. DOI: 10.1037/003505.Peer-Reviewed Original ResearchQualitative Electrotonic Comparison of Three Classes of Hippocampal Neurons in the Rat
Carnevale N, Tsai K, Claiborne B, Brown T. Qualitative Electrotonic Comparison of Three Classes of Hippocampal Neurons in the Rat. 1995, 67-72. DOI: 10.1007/978-1-4615-2235-5_11.Peer-Reviewed Original Research
1994
Hebbian learning is jointly controlled by electrotonic and input structure
Tsai K, Carnevale N, Brown T. Hebbian learning is jointly controlled by electrotonic and input structure. Network Computation In Neural Systems 1994, 5: 1-19. DOI: 10.1088/0954-898x_5_1_001.Peer-Reviewed Original ResearchEfficient mapping from neuroanatomical to electrotonic space
Tsai K, Carnevale N, Claiborne B, Brown T. Efficient mapping from neuroanatomical to electrotonic space. Network Computation In Neural Systems 1994, 5: 21-46. DOI: 10.1088/0954-898x_5_1_002.Peer-Reviewed Original Research
1990
Varicella zoster virus transverse myelitis without cutaneous rash
Heller H, Carnevale N, Steigbigel R. Varicella zoster virus transverse myelitis without cutaneous rash. The American Journal Of Medicine 1990, 88: 550-551. PMID: 2337114, DOI: 10.1016/0002-9343(90)90445-j.Peer-Reviewed Original Research
1989
Comparisons between Active Properties of Distal Dendritic Branches and Spines: Implications for Neuronal Computations
Shepherd G, Woolf T, Carnevale N. Comparisons between Active Properties of Distal Dendritic Branches and Spines: Implications for Neuronal Computations. Journal Of Cognitive Neuroscience 1989, 1: 273-286. PMID: 23968510, DOI: 10.1162/jocn.1989.1.3.273.Peer-Reviewed Original Research
1988
Simulating neurons with SABER
Carnevale N, Woolf T, Shepherd G. Simulating neurons with SABER. 1988, 1508 vol.3. DOI: 10.1109/iembs.1988.95353.Peer-Reviewed Original Research