2022
LitCovid in 2022: an information resource for the COVID-19 literature
Chen Q, Allot A, Leaman R, Wei C, Aghaarabi E, Guerrerio J, Xu L, Lu Z. LitCovid in 2022: an information resource for the COVID-19 literature. Nucleic Acids Research 2022, 51: d1512-d1518. PMID: 36350613, PMCID: PMC9825538, DOI: 10.1093/nar/gkac1005.Peer-Reviewed Original ResearchLitMC-BERT: Transformer-Based Multi-Label Classification of Biomedical Literature With An Application on COVID-19 Literature Curation
Chen Q, Du J, Allot A, Lu Z. LitMC-BERT: Transformer-Based Multi-Label Classification of Biomedical Literature With An Application on COVID-19 Literature Curation. IEEE/ACM Transactions On Computational Biology And Bioinformatics 2022, 19: 2584-2595. PMID: 35536809, PMCID: PMC9647722, DOI: 10.1109/tcbb.2022.3173562.Peer-Reviewed Original ResearchMulti-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations
Chen Q, Allot A, Leaman R, Islamaj R, Du J, Fang L, Wang K, Xu S, Zhang Y, Bagherzadeh P, Bergler S, Bhatnagar A, Bhavsar N, Chang Y, Lin S, Tang W, Zhang H, Tavchioski I, Pollak S, Tian S, Zhang J, Otmakhova Y, Yepes A, Dong H, Wu H, Dufour R, Labrak Y, Chatterjee N, Tandon K, Laleye F, Rakotoson L, Chersoni E, Gu J, Friedrich A, Pujari S, Chizhikova M, Sivadasan N, Vg S, Lu Z. Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations. Database 2022, 2022: baac069. PMID: 36043400, PMCID: PMC9428574, DOI: 10.1093/database/baac069.Peer-Reviewed Original Research
2021
Artificial Intelligence in Action: Addressing the COVID-19 Pandemic with Natural Language Processing
Chen Q, Leaman R, Allot A, Luo L, Wei C, Yan S, Lu Z. Artificial Intelligence in Action: Addressing the COVID-19 Pandemic with Natural Language Processing. Annual Review Of Biomedical Data Science 2021, 4: 1-27. PMID: 34465169, DOI: 10.1146/annurev-biodatasci-021821-061045.Peer-Reviewed Original ResearchConceptsNatural language processingArtificial intelligenceLanguage processingInformation needsLiterature-based discoveryInformation retrievalEntity recognitionMisinformation detectionInformation overloadNLP studiesNLP tasksEmotion analysisTopic modelingCOVID-19 pandemicIntelligenceAdditional tasksHuman languagePublic health measuresTaskHealth measuresProcessingSerious health effectsHealth effectsRetrievalDatasetLitSuggest: a web-based system for literature recommendation and curation using machine learning
Allot A, Lee K, Chen Q, Luo L, Lu Z. LitSuggest: a web-based system for literature recommendation and curation using machine learning. Nucleic Acids Research 2021, 49: w352-w358. PMID: 33950204, PMCID: PMC8262723, DOI: 10.1093/nar/gkab326.Peer-Reviewed Original ResearchConceptsNatural language processingWeb-based systemQuery methodSearch systemSearch queriesMachine learningWeb serverCuration servicesAdvanced machineUser projectsLanguage processingClassification resultsTraining corpusSingle interfaceUsersBiomedical researchersCollaborative analysisHigh accuracyLiterature recommendationsPubMed articlesMachineCurationComputational methodsSpecialized knowledgeKeywords
2020
LitCovid: an open database of COVID-19 literature
Chen Q, Allot A, Lu Z. LitCovid: an open database of COVID-19 literature. Nucleic Acids Research 2020, 49: d1534-d1540. PMID: 33166392, PMCID: PMC7778958, DOI: 10.1093/nar/gkaa952.Peer-Reviewed Original ResearchConceptsSerious information overloadCuration workflowData miningInformation overloadCollected articlesInformation needsOpen databaseManual curationNews articlesCOVID-19 literatureLiterature resourcesRapid growthUsersCOVID-19 researchMiningWorkflowAlgorithmCurationDate scientific informationDatabaseInformationGeneral publicResourcesAccessTextKeep up with the latest coronavirus research
Chen Q, Allot A, Lu Z. Keep up with the latest coronavirus research. Nature 2020, 579: 193-193. PMID: 32157233, DOI: 10.1038/d41586-020-00694-1.Peer-Reviewed Original Research