2023
Perception and memory retrieval states are reflected in distributed patterns of background functional connectivity
Li Y, Wang Y, Turk-Browne N, Kuhl B, Hutchinson J. Perception and memory retrieval states are reflected in distributed patterns of background functional connectivity. NeuroImage 2023, 276: 120221. PMID: 37290674, PMCID: PMC10484747, DOI: 10.1016/j.neuroimage.2023.120221.Peer-Reviewed Original ResearchMeSH KeywordsBrainBrain MappingHumansMagnetic Resonance ImagingMemoryMemory, EpisodicNeural PathwaysNeuroimagingPerceptionConceptsDefault mode networkMemory retrievalCognitive stateRetrieval statesRetrosplenial cortexFunctional connectivityDistinct neural statesTarget of perceptionLarge-scale brain networksControl networkHuman neuroimaging studiesSame visual inputPerception statesCognitive processingBackground connectivityHuman fMRIVisual stimuliNeuroimaging studiesBrain networksMode networkNeural statesVisual inputNeural activityPatterns of connectivityPerception
2022
Brain charts for the human lifespan
Bethlehem RAI, Seidlitz J, White SR, Vogel JW, Anderson KM, Adamson C, Adler S, Alexopoulos GS, Anagnostou E, Areces-Gonzalez A, Astle DE, Auyeung B, Ayub M, Bae J, Ball G, Baron-Cohen S, Beare R, Bedford SA, Benegal V, Beyer F, Blangero J, Blesa Cábez M, Boardman JP, Borzage M, Bosch-Bayard JF, Bourke N, Calhoun VD, Chakravarty MM, Chen C, Chertavian C, Chetelat G, Chong YS, Cole JH, Corvin A, Costantino M, Courchesne E, Crivello F, Cropley VL, Crosbie J, Crossley N, Delarue M, Delorme R, Desrivieres S, Devenyi GA, Di Biase MA, Dolan R, Donald KA, Donohoe G, Dunlop K, Edwards AD, Elison JT, Ellis CT, Elman JA, Eyler L, Fair DA, Feczko E, Fletcher PC, Fonagy P, Franz CE, Galan-Garcia L, Gholipour A, Giedd J, Gilmore JH, Glahn DC, Goodyer IM, Grant PE, Groenewold NA, Gunning FM, Gur RE, Gur RC, Hammill CF, Hansson O, Hedden T, Heinz A, Henson RN, Heuer K, Hoare J, Holla B, Holmes AJ, Holt R, Huang H, Im K, Ipser J, Jack CR, Jackowski AP, Jia T, Johnson KA, Jones PB, Jones DT, Kahn RS, Karlsson H, Karlsson L, Kawashima R, Kelley EA, Kern S, Kim KW, Kitzbichler MG, Kremen WS, Lalonde F, Landeau B, Lee S, Lerch J, Lewis JD, Li J, Liao W, Liston C, Lombardo MV, Lv J, Lynch C, Mallard TT, Marcelis M, Markello RD, Mathias SR, Mazoyer B, McGuire P, Meaney MJ, Mechelli A, Medic N, Misic B, Morgan SE, Mothersill D, Nigg J, Ong MQW, Ortinau C, Ossenkoppele R, Ouyang M, Palaniyappan L, Paly L, Pan PM, Pantelis C, Park MM, Paus T, Pausova Z, Paz-Linares D, Pichet Binette A, Pierce K, Qian X, Qiu J, Qiu A, Raznahan A, Rittman T, Rodrigue A, Rollins CK, Romero-Garcia R, Ronan L, Rosenberg MD, Rowitch DH, Salum GA, Satterthwaite TD, Schaare HL, Schachar RJ, Schultz AP, Schumann G, Schöll M, Sharp D, Shinohara RT, Skoog I, Smyser CD, Sperling RA, Stein DJ, Stolicyn A, Suckling J, Sullivan G, Taki Y, Thyreau B, Toro R, Traut N, Tsvetanov KA, Turk-Browne NB, Tuulari JJ, Tzourio C, Vachon-Presseau É, Valdes-Sosa MJ, Valdes-Sosa PA, Valk SL, van Amelsvoort T, Vandekar SN, Vasung L, Victoria LW, Villeneuve S, Villringer A, Vértes PE, Wagstyl K, Wang YS, Warfield SK, Warrier V, Westman E, Westwater ML, Whalley HC, Witte AV, Yang N, Yeo B, Yun H, Zalesky A, Zar HJ, Zettergren A, Zhou JH, Ziauddeen H, Zugman A, Zuo XN, Bullmore E, Alexander-Bloch A. Brain charts for the human lifespan. Nature 2022, 604: 525-533. PMID: 35388223, PMCID: PMC9021021, DOI: 10.1038/s41586-022-04554-y.Peer-Reviewed Original Research
2021
Brain kernel: A new spatial covariance function for fMRI data
Wu A, Nastase SA, Baldassano CA, Turk-Browne NB, Norman KA, Engelhardt BE, Pillow JW. Brain kernel: A new spatial covariance function for fMRI data. NeuroImage 2021, 245: 118580. PMID: 34740792, DOI: 10.1016/j.neuroimage.2021.118580.Peer-Reviewed Original Research
2020
BrainIAK tutorials: User-friendly learning materials for advanced fMRI analysis
Kumar M, Ellis CT, Lu Q, Zhang H, Capotă M, Willke TL, Ramadge PJ, Turk-Browne NB, Norman KA. BrainIAK tutorials: User-friendly learning materials for advanced fMRI analysis. PLOS Computational Biology 2020, 16: e1007549. PMID: 31940340, PMCID: PMC6961866, DOI: 10.1371/journal.pcbi.1007549.Peer-Reviewed Original ResearchConceptsOpen-source Python software packageHigh-performance computing clusterNew programming languageOpen source softwareMachine-learning methodsPython software packageHigh-dimensional fMRI dataComputing clusterFile handlingMachine learningProgramming languageNovice usersDifferent softwareLarge memoryPython packageCustom codeSoftware packageSteep learning curveAdvanced toolsEfficient techniqueMarkov modelEvent segmentationReal-time fMRIAnalysis packageSoftware
2018
Associative Prediction of Visual Shape in the Hippocampus
Kok P, Turk-Browne NB. Associative Prediction of Visual Shape in the Hippocampus. Journal Of Neuroscience 2018, 38: 6888-6899. PMID: 29986875, PMCID: PMC6070666, DOI: 10.1523/jneurosci.0163-18.2018.Peer-Reviewed Original ResearchConceptsAssociative predictionAuditory cuesVisual shapesVisual cortexSensory systemsFemale human participantsHigh-resolution fMRI signalsAspects of cognitionCross-modal associationsHuman brainProcess of inferenceHippocampal predictionsPerceptual processingHuman participantsPrior expectationsVisual informationMemory systemNeural activitySensory cortexFMRI signalsCuesMemoryCorresponding objectsPerceptionCortexNeural Overlap in Item Representations Across Episodes Impairs Context Memory
Kim G, Norman KA, Turk-Browne NB. Neural Overlap in Item Representations Across Episodes Impairs Context Memory. Cerebral Cortex 2018, 29: 2682-2693. PMID: 29897407, PMCID: PMC6519698, DOI: 10.1093/cercor/bhy137.Peer-Reviewed Original ResearchMeSH KeywordsBrainFemaleHumansMagnetic Resonance ImagingMaleMental RecallNeuroimagingRecognition, PsychologyYoung AdultConceptsSubsequent source memorySource memoryContext memoryInitial contextBetter source memoryNovel contextual informationLateral occipital cortexNeural overlapRepresentational similarityNeural representationNeural patternsFMRI studyItem representationsSecond presentationLater retrievalDifferent tasksMemorySame itemsOccipital cortexInitial taskPattern similaritySuch reactivationInitial itemsNovel experienceContextual information