2018
Draft Genome Sequence of an Erwinia tracheiphila Isolate from an Infected Muskmelon (Cucumis melo)
Shapiro L, Andrade A, Scully E, Rocha J, Paulson J, Kolter R. Draft Genome Sequence of an Erwinia tracheiphila Isolate from an Infected Muskmelon (Cucumis melo). Microbiology Resource Announcements 2018, 7: 10.1128/mra.01058-18. PMID: 30533754, PMCID: PMC6256489, DOI: 10.1128/mra.01058-18.Peer-Reviewed Original ResearchInfected muskmelonDraft genome sequenceBacterial plant pathogensCucumis meloChromosome contigPlasmid contigsEastern North AmericaGenome sequencePlant pathogensE. tracheiphilaGenetic variationErwinia tracheiphilaContigsGenomeCucumisNorth AmericaMuskmelonBacteriophageErwiniaPlasmidPathogensSequenceIsolates
2017
Minimal genetic change in Vibrio cholerae in Mozambique over time: Multilocus variable number tandem repeat analysis and whole genome sequencing
Garrine M, Mandomando I, Vubil D, Nhampossa T, Acacio S, Li S, Paulson J, Almeida M, Domman D, Thomson N, Alonso P, Stine O. Minimal genetic change in Vibrio cholerae in Mozambique over time: Multilocus variable number tandem repeat analysis and whole genome sequencing. PLOS Neglected Tropical Diseases 2017, 11: e0005671. PMID: 28622368, PMCID: PMC5489214, DOI: 10.1371/journal.pntd.0005671.Peer-Reviewed Original ResearchConceptsMultilocus variable-number tandem-repeat analysisWhole-genome sequencingTandem repeat analysisGenome sequenceMultilocus variable number tandem repeat analysisVariable number tandem repeat analysisVariable-number tandem repeat analysisCholera toxin geneVibrio cholerae isolatesPresence of recombinationMinimal genetic changeMLVA lociCholerae isolatesSeventh pandemicGenetic relatednessClonal complexesToxin genesMolecular clockVibrio choleraeClinical isolatesIdentical isolatesGenetic changesRepeat analysisEnvironmental reservoirsIsolates
2015
Methylome Analysis in Chickens Immunized with Infectious Laryngotracheitis Vaccine
Carrillo J, He Y, Luo J, Menendez K, Tablante N, Zhao K, Paulson J, Li B, Song J. Methylome Analysis in Chickens Immunized with Infectious Laryngotracheitis Vaccine. PLOS ONE 2015, 10: e0100476. PMID: 26107953, PMCID: PMC4481310, DOI: 10.1371/journal.pone.0100476.Peer-Reviewed Original ResearchMeSH KeywordsAnimalsChickensCpG IslandsDNA MethylationEukaryotic Initiation Factor-2Gene Regulatory NetworksGenomeHerpesvirus 1, GallidImmune System DiseasesInflammationRibosomal Protein S6 Kinases, 70-kDaRNA Processing, Post-TranscriptionalSignal TransductionTOR Serine-Threonine KinasesTranscription Initiation SiteVaccinesConceptsTranscription start siteMethyl-CpG binding domain protein-enriched genome sequencingDNA methylationProtein-enriched genome sequencingRNA post-transcriptional modificationsIdentified canonical pathwaysRegulation of eIF4Post-transcriptional modificationsDifferentially expressed genesAxonal guidance signalingGlobal DNA methylationHypermethylated DMRsP70S6K signalingGenome sequenceStart siteMethylome analysisCpG islandsGene networksMethyl-CpGEIF2 signalingCanonical pathwaysK signalingGenesMTOR signalingInfectious laryngotracheitis