2021
BrainGNN: Interpretable Brain Graph Neural Network for fMRI Analysis
Li X, Zhou Y, Dvornek N, Zhang M, Gao S, Zhuang J, Scheinost D, Staib LH, Ventola P, Duncan JS. BrainGNN: Interpretable Brain Graph Neural Network for fMRI Analysis. Medical Image Analysis 2021, 74: 102233. PMID: 34655865, PMCID: PMC9916535, DOI: 10.1016/j.media.2021.102233.Peer-Reviewed Original ResearchMeSH KeywordsAutism Spectrum DisorderBrainConnectomeHumansMagnetic Resonance ImagingNeural Networks, ComputerConceptsFunctional magnetic resonance imagesGraph neural network frameworkMedical image analysisGraph neural networkGraph convolutional layersNeural network frameworkDifferent evaluation metricsSpecific task statesIndependent fMRI datasetsPooling layerConvolutional layersConsistency lossNetwork frameworkNeural networkFMRI datasetsImage analysis methodEvaluation metricsDetection resultsBrain graphsSubjects releaseROI selectionImage analysisCognitive stimuliTask statesFMRI analysis
2018
Learning Generalizable Recurrent Neural Networks from Small Task-fMRI Datasets
Dvornek NC, Yang D, Ventola P, Duncan JS. Learning Generalizable Recurrent Neural Networks from Small Task-fMRI Datasets. Lecture Notes In Computer Science 2018, 11072: 329-337. PMID: 30873514, PMCID: PMC6411297, DOI: 10.1007/978-3-030-00931-1_38.Peer-Reviewed Original ResearchConceptsRecurrent neural networkNeural networkTask fMRI datasetsMedical image analysis problemsSuch deep networksImage analysis problemsTask fMRI scanTypical control subjectsDeep networkDeep learningTraining lossSmall datasetsLarge datasetsNumber of approachesAutism spectrum disorderAnalysis problemDatasetNetworkTraining runsImage analysisGeneralizable modelNon-imaging variablesSpectrum disorderFMRI analysisModel performance
2016
Brain responses to biological motion predict treatment outcome in young children with autism
Yang D, Pelphrey KA, Sukhodolsky DG, Crowley MJ, Dayan E, Dvornek NC, Venkataraman A, Duncan J, Staib L, Ventola P. Brain responses to biological motion predict treatment outcome in young children with autism. Translational Psychiatry 2016, 6: e948-e948. PMID: 27845779, PMCID: PMC5314125, DOI: 10.1038/tp.2016.213.Peer-Reviewed Original ResearchConceptsAutism spectrum disorderYoung childrenSocial information processingMultivariate pattern analysisMotivation/rewardBiological motionCore deficitComplex neurodevelopmental disorderBrain responsesResponse treatmentSpectrum disorderNeurobiological markersNeural predictorsInformation processingBehavioral interventionsIndividual childrenNeurodevelopmental disordersCurrent findingsNeural circuitsBehavioral deficitsEarly childhoodChildrenUnsuccessful interventionsNeurobiomarkersPattern analysisPivotal response treatment prompts a functional rewiring of the brain among individuals with autism spectrum disorder
Venkataraman A, Yang D, Dvornek N, Staib LH, Duncan JS, Pelphrey KA, Ventola P. Pivotal response treatment prompts a functional rewiring of the brain among individuals with autism spectrum disorder. Neuroreport 2016, 27: 1081-1085. PMID: 27532879, PMCID: PMC5007196, DOI: 10.1097/wnr.0000000000000662.Peer-Reviewed Original ResearchConceptsPivotal Response TreatmentAutism spectrum disorderOccipital-temporal cortexAttentional systemResponse treatmentSpectrum disorderOrbitofrontal cortexPosterior cingulateHigh-level objectsBehavioral interventionsLearning mechanismPerception shiftProcessing areasNeural circuitsFunctional rewiringCortexTreatment regimenAutismInterventionNovel Bayesian frameworkCingulateFunctional changesIndividualsDisordersObjects
2015
An unbiased Bayesian approach to functional connectomics implicates social-communication networks in autism
Venkataraman A, Duncan JS, Yang D, Pelphrey KA. An unbiased Bayesian approach to functional connectomics implicates social-communication networks in autism. NeuroImage Clinical 2015, 8: 356-366. PMID: 26106561, PMCID: PMC4474177, DOI: 10.1016/j.nicl.2015.04.021.Peer-Reviewed Original ResearchMeSH KeywordsAdolescentAutism Spectrum DisorderBayes TheoremCerebral CortexChildCommunicationConnectomeHumansMagnetic Resonance ImagingMaleNerve NetSocial PerceptionConceptsAutism spectrum disorderAutism Brain Imaging Data ExchangeSuperior temporal sulcusMiddle temporal gyrusTemporal sulcusTemporal gyrusRight posterior superior temporal sulcusPosterior superior temporal sulcusFunctional magnetic resonance imaging studyFunctional connectomicsTemporo-parietal junctionResting-state functional magnetic resonance imaging studyRight temporal poleIntrinsic functional networksDefault mode networkPossible neural mechanismsPosterior cingulate cortexMeta-analytic databaseIntra-hemispheric connectivityInter-hemispheric connectivityMagnetic resonance imaging studyASD patientsResonance imaging studyNeural mechanismsSpectrum disorder