2023
Everglades virus: an underrecognized disease-causing subtype of Venezuelan equine encephalitis virus endemic to Florida, USA
Burkett-Cadena N, Fish D, Weaver S, Vittor A. Everglades virus: an underrecognized disease-causing subtype of Venezuelan equine encephalitis virus endemic to Florida, USA. Journal Of Medical Entomology 2023, 60: 1149-1164. PMID: 37862065, PMCID: PMC10645373, DOI: 10.1093/jme/tjad070.Peer-Reviewed Original ResearchConceptsEverglades virusEncephalitis virusCases of meningitisCotton rat Sigmodon hispidusHigh natural infection rateEpidemic strainsNatural infection rateInfection rateWidespread transmissionAbundance of AedesNatural infectionSubtype IISubtypesFrequent feedingFrequency of contactCertain mosquitoesVector competenceVirusHuman diseasesRodentsVertebrate hosts
2022
Seasonal Dynamics of Mosquito-Borne Viruses in the Southwestern Florida Everglades, 2016, 2017.
Anderson J, Fish D, Armstrong P, Misencik M, Bransfield A, Ferrandino F, Andreadis T, Stenglein M, Kapuscinski M. Seasonal Dynamics of Mosquito-Borne Viruses in the Southwestern Florida Everglades, 2016, 2017. American Journal Of Tropical Medicine And Hygiene 2022, 106: 610-622. PMID: 35008051, PMCID: PMC8832897, DOI: 10.4269/ajtmh.20-1547.Peer-Reviewed Original ResearchConceptsSpecies of virusesSpecies of mosquitoesGumbo LimboShotgun metagenomic sequencingShark RiverSpecies complexWest Nile virusHardwood hammocksEverglades virusNotable speciesMosquito-Borne VirusesMetagenomic sequencingAnopheles speciesNile virusSeasonal dynamicsSpeciesFlorida EvergladesTensaw virusCulex nigripalpusEvergladesPools of CxCypress swampsNigripalpusMosquitoesAnopheles crucians
2017
Characterization of Three New Insect-Specific Flaviviruses: Their Relationship to the Mosquito-Borne Flavivirus Pathogens
Guzman H, Contreras-Gutierrez MA, da Rosa A, Nunes MRT, Cardoso JF, Popov VL, Young KI, Savit C, Wood TG, Widen SG, Watts DM, Hanley KA, Perera D, Fish D, Vasilakis N, Tesh RB. Characterization of Three New Insect-Specific Flaviviruses: Their Relationship to the Mosquito-Borne Flavivirus Pathogens. American Journal Of Tropical Medicine And Hygiene 2017, 98: 410-419. PMID: 29016330, PMCID: PMC5929187, DOI: 10.4269/ajtmh.17-0350.Peer-Reviewed Original ResearchThere is inadequate evidence to support the division of the genus Borrelia
Margos G, Marosevic D, Cutler S, Derdakova M, Diuk-Wasser M, Emler S, Fish D, Gray J, Hunfeldt K, Jaulhac B, Kahl O, Kovalev S, Kraiczy P, Lane R, Lienhard R, Lindgren P, Ogden N, Ornstein K, Rupprecht T, Schwartz I, Sing A, Straubinger R, Strle F, Voordouw M, Rizzoli A, Stevenson B, Fingerle V. There is inadequate evidence to support the division of the genus Borrelia. International Journal Of Systematic And Evolutionary Microbiology 2017, 67: 1081-1084. PMID: 27930271, DOI: 10.1099/ijsem.0.001717.Peer-Reviewed Original ResearchGenetic characterization, molecular epidemiology, and phylogenetic relationships of insect-specific viruses in the taxon Negevirus
Nunes MRT, Contreras-Gutierrez MA, Guzman H, Martins LC, Barbirato MF, Savit C, Balta V, Uribe S, Vivero R, Suaza JD, Oliveira H, Neto J, Carvalho VL, da Silva SP, Cardoso JF, de Oliveira RS, da Silva Lemos P, Wood TG, Widen SG, Vasconcelos PFC, Fish D, Vasilakis N, Tesh RB. Genetic characterization, molecular epidemiology, and phylogenetic relationships of insect-specific viruses in the taxon Negevirus. Virology 2017, 504: 152-167. PMID: 28193550, PMCID: PMC5394984, DOI: 10.1016/j.virol.2017.01.022.Peer-Reviewed Original ResearchConceptsInsect-specific virusesGenetic characterizationNovel insect-specific virusesPlant virus generaMajor phylogenetic groupsHigh genetic variabilityComprehensive genetic characterizationFull-length sequencesCross-species transmissionPhylogenetic relationshipsEvolutionary analysisVirus taxaGenetic variabilityPhylogenetic groupsDistinct generaVirus genusNegevirusesMolecular analysisGenusMolecular epidemiologyDiverse groupPhlebotomine sandfliesTaxaArthropodsVirus
2016
Almendravirus: A Proposed New Genus of Rhabdoviruses Isolated from Mosquitoes in Tropical Regions of the Americas.
Contreras MA, Eastwood G, Guzman H, Popov V, Savit C, Uribe S, Kramer LD, Wood TG, Widen SG, Fish D, Tesh RB, Vasilakis N, Walker PJ. Almendravirus: A Proposed New Genus of Rhabdoviruses Isolated from Mosquitoes in Tropical Regions of the Americas. American Journal Of Tropical Medicine And Hygiene 2016, 96: 100-109. PMID: 27799634, PMCID: PMC5239673, DOI: 10.4269/ajtmh.16-0403.Peer-Reviewed Original ResearchConceptsL protein sequencesSimilar genome organizationStructural protein genesAnimal rhabdovirusesGenome organizationUnique cladePhylogenetic analysisEverglades National ParkArthropod populationsProtein geneProtein sequencesL geneVertebrate hostsNew genusSequence analysisDiverse familyHematophagous arthropodsRNA virusesAnopheles quadrimaculatus mosquitoesGenesNational ParkCladeArthropodsNovel virusRhabdovirus
2011
Humans Infected with Relapsing Fever Spirochete Borrelia miyamotoi, Russia - Volume 17, Number 10—October 2011 - Emerging Infectious Diseases journal - CDC
Platonov AE, Karan LS, Kolyasnikova NM, Makhneva NA, Toporkova MG, Maleev VV, Fish D, Krause PJ. Humans Infected with Relapsing Fever Spirochete Borrelia miyamotoi, Russia - Volume 17, Number 10—October 2011 - Emerging Infectious Diseases journal - CDC. Emerging Infectious Diseases 2011, 17: 1816-1823. PMID: 22000350, PMCID: PMC3310649, DOI: 10.3201/eid1710.101474.Peer-Reviewed Original ResearchConceptsB. miyamotoi infectionMiyamotoi infectionInfectious Diseases journal - CDCBorrelia miyamotoiInfluenza-like illnessB. burgdorferi infectionFever spirochete Borrelia miyamotoiDisease-like symptomsFebrile illnessI. ricinus ticksErythema migransClinical manifestationsIxodid tick vectorsBurgdorferi infectionI. scapularis ticksIxodes persulcatus ticksInfectionRicinus ticksScapularis ticksB. burgdorferiB. gariniiFeverWidespread prevalenceIllnessMiyamotoiPopulation genetics, taxonomy, phylogeny and evolution of Borrelia burgdorferi sensu lato
Margos G, Vollmer S, Ogden N, Fish D. Population genetics, taxonomy, phylogeny and evolution of Borrelia burgdorferi sensu lato. Infection Genetics And Evolution 2011, 11: 1545-1563. PMID: 21843658, PMCID: PMC3214628, DOI: 10.1016/j.meegid.2011.07.022.Peer-Reviewed Original ResearchConceptsEvolutionary relationshipsSingle-locus approachesMultilocus sequence typing (MLST) schemeSequence typing schemePopulation geneticsPopulation structureBacterial speciesSensu latoLyme borreliosis spirochetesNovel insightsPhylogenyImportant groupLocus approachZoonotic bacteriaBacterial microorganismsBorrelia burgdorferi sensu latoTaxonomyTyping schemeBurgdorferi sensu latoGeneticsSpeciesLatoMicroorganismsBacteriaEvolution
2010
Multilocus sequence analysis of Borrelia bissettii strains from North America reveals a new Borrelia species, Borrelia kurtenbachii
Margos G, Hojgaard A, Lane R, Cornet M, Fingerle V, Rudenko N, Ogden N, Aanensen D, Fish D, Piesman J. Multilocus sequence analysis of Borrelia bissettii strains from North America reveals a new Borrelia species, Borrelia kurtenbachii. Ticks And Tick-borne Diseases 2010, 1: 151-158. PMID: 21157575, PMCID: PMC3000690, DOI: 10.1016/j.ttbdis.2010.09.002.Peer-Reviewed Original ResearchConceptsMultilocus sequence analysisSequence analysisGenetic distance analysisNew Borrelia speciesBorrelia speciesDifferent transmission cyclesBorrelia bissettiiB. bissettiiLinear chromosomesPhylogenetic relationshipsEcological differencesConcatenated sequencesPhylogenetic analysisHousekeeping genesVector associationNorth AmericaInternal fragmentDistance analysisBorrelia genospeciesB. carolinensisReservoir hostsTransmission cycleI. spinipalpisIxodes pacificusRelated clusters
2009
Phylogeography of Borrelia burgdorferi in the eastern United States reflects multiple independent Lyme disease emergence events
Hoen AG, Margos G, Bent SJ, Diuk-Wasser MA, Barbour A, Kurtenbach K, Fish D. Phylogeography of Borrelia burgdorferi in the eastern United States reflects multiple independent Lyme disease emergence events. Proceedings Of The National Academy Of Sciences Of The United States Of America 2009, 106: 15013-15018. PMID: 19706476, PMCID: PMC2727481, DOI: 10.1073/pnas.0903810106.Peer-Reviewed Original ResearchConceptsB. burgdorferi populationsPhylogeographic population structurePopulation size expansionBacterial housekeeping geneDisease emergence eventsPopulation structureRange expansionHousekeeping genesB. burgdorferiDescendent clonesEuropean settlementEmergence eventsEastern United StatesSize expansionCoastal ConnecticutTick vectorGeographic extent
2008
MLST of housekeeping genes captures geographic population structure and suggests a European origin of Borrelia burgdorferi
Margos G, Gatewood A, Aanensen D, Hanincová K, Terekhova D, Vollmer S, Cornet M, Piesman J, Donaghy M, Bormane A, Hurn M, Feil E, Fish D, Casjens S, Wormser G, Schwartz I, Kurtenbach K. MLST of housekeeping genes captures geographic population structure and suggests a European origin of Borrelia burgdorferi. Proceedings Of The National Academy Of Sciences Of The United States Of America 2008, 105: 8730-8735. PMID: 18574151, PMCID: PMC2435589, DOI: 10.1073/pnas.0800323105.Peer-Reviewed Original ResearchConceptsHousekeeping genesIntergenic spacerPopulation structureGeographic population structureChromosomal housekeeping genesMultilocus sequence typing (MLST) schemeB. burgdorferiPhylogenetic signalNorth AmericaEvolutionary relationshipsSequence typing schemeEvolutionary trajectoriesIGS locusSequence dataMLST schemeCultured isolatesGenesBorrelia burgdorferiOuter surface protein CMLST dataDistinct populationsSurface protein CBacterium Borrelia burgdorferiEuropean populationsVector-borne diseases
2004
Typing of Borrelia Relapsing Fever Group Strains - Volume 10, Number 9—September 2004 - Emerging Infectious Diseases journal - CDC
Bunikis J, Tsao J, Garpmo U, Berglund J, Fish D, Barbour A. Typing of Borrelia Relapsing Fever Group Strains - Volume 10, Number 9—September 2004 - Emerging Infectious Diseases journal - CDC. Emerging Infectious Diseases 2004, 10: 1661-1664. PMID: 15498172, PMCID: PMC3320305, DOI: 10.3201/eid1009.040236.Peer-Reviewed Original ResearchSequence typing reveals extensive strain diversity of the Lyme borreliosis agents Borrelia burgdorferi in North America and Borrelia afzelii in Europe
Bunikis J, Garpmo U, Tsao J, Berglund J, Fish D, Barbour A. Sequence typing reveals extensive strain diversity of the Lyme borreliosis agents Borrelia burgdorferi in North America and Borrelia afzelii in Europe. Microbiology 2004, 150: 1741-1755. PMID: 15184561, DOI: 10.1099/mic.0.26944-0.Peer-Reviewed Original ResearchConceptsIntergenic spacerGenetic diversityIGS locusIGS genotypesOspC allelesHigh nucleotide diversityDistinct clonal lineagesGreater genetic diversityB. burgdorferiNorth-eastern United StatesTick vector Ixodes scapularisNucleotide diversityMonophyletic lineageSignature nucleotidesPhylogenetic studiesLinkage groupsIGS sequencesPhylogenetic inferenceIntragenic recombinationExtensive strain diversityDetectable recombinationVector Ixodes scapularisClonal lineagesField sitesLoci
2003
Genetic Variability within Borrelia burgdorferi Sensu Lato Genospecies Established by PCR-Single-Strand Conformation Polymorphism Analysis of the rrfA-rrlB Intergenic Spacer in Ixodes ricinus Ticks from the Czech Republic
Derdáková M, Beati L, Pet'ko B, Stanko M, Fish D. Genetic Variability within Borrelia burgdorferi Sensu Lato Genospecies Established by PCR-Single-Strand Conformation Polymorphism Analysis of the rrfA-rrlB Intergenic Spacer in Ixodes ricinus Ticks from the Czech Republic. Applied And Environmental Microbiology 2003, 69: 509-516. PMID: 12514035, PMCID: PMC152394, DOI: 10.1128/aem.69.1.509-516.2003.Peer-Reviewed Original ResearchAnimalsBacterial Typing TechniquesBorrelia burgdorferi GroupCzech RepublicDNA, BacterialDNA, Ribosomal SpacerGenetic VariationGenotypeHumansIxodesMolecular Sequence DataPhylogenyPolymerase Chain ReactionPolymorphism, Restriction Fragment LengthPolymorphism, Single-Stranded ConformationalSequence Analysis, DNA
2001
A Relapsing Fever Group Spirochete Transmitted by Ixodes scapularis Ticks
Scoles G, Papero M, Beati L, Fish D. A Relapsing Fever Group Spirochete Transmitted by Ixodes scapularis Ticks. Vector-Borne And Zoonotic Diseases 2001, 1: 21-34. PMID: 12653133, DOI: 10.1089/153036601750137624.Peer-Reviewed Original ResearchAnimalsAntigens, BacterialAntigens, SurfaceArachnid VectorsBacterial Outer Membrane ProteinsBacterial VaccinesBorreliaDNA, BacterialDNA, RibosomalFemaleFlagellinInfectious Disease Transmission, VerticalIxodesLipoproteinsPeromyscusPhylogenyPolymerase Chain ReactionRabbitsRelapsing FeverSequence Homology, Nucleic AcidSheep
2000
Francisella-like Endosymbionts of Ticks
Sun L, Scoles G, Fish D, O'Neill S. Francisella-like Endosymbionts of Ticks. Journal Of Invertebrate Pathology 2000, 76: 301-303. PMID: 11112376, DOI: 10.1006/jipa.2000.4983.Peer-Reviewed Original Research