2024
Genome-wide association study between SARS-CoV-2 single nucleotide polymorphisms and virus copies during infections
Li K, Chaguza C, Stamp J, Chew Y, Chen N, Ferguson D, Pandya S, Kerantzas N, Schulz W, Initiative Y, Hahn A, Ogbunugafor C, Pitzer V, Crawford L, Weinberger D, Grubaugh N. Genome-wide association study between SARS-CoV-2 single nucleotide polymorphisms and virus copies during infections. PLOS Computational Biology 2024, 20: e1012469. PMID: 39288189, PMCID: PMC11432881, DOI: 10.1371/journal.pcbi.1012469.Peer-Reviewed Original ResearchConceptsGenome-wide association studiesSingle-nucleotide polymorphismsAssociation studiesWhole-genome sequencingAmino acid changesSingle nucleotide polymorphismsPairs of substitutionsViral copiesEpistasis testsGenome sequenceGenetic variationSpike geneAcid changesViral genomeNucleotide polymorphismsSARS-CoV-2Detect interactionsHost factorsVirus copiesCopyInfection dynamicsRT-qPCRPolymorphismOmicron BASARS-CoV-2 infection
2001
Use of Plastic Vacutainer Tubes for Quantification of Human Immunodeficiency Virus Type 1 in Blood Specimens
Landry M, Garner R, Ferguson D. Use of Plastic Vacutainer Tubes for Quantification of Human Immunodeficiency Virus Type 1 in Blood Specimens. Journal Of Clinical Microbiology 2001, 39: 354-356. PMID: 11136799, PMCID: PMC87730, DOI: 10.1128/jcm.39.1.354-356.2001.Peer-Reviewed Original ResearchMeSH KeywordsBlood Specimen CollectionGlassHIV InfectionsHIV-1HumansPlasticsRNA, ViralViral LoadViremia