2023
Network embedding unveils the hidden interactions in the mammalian virome
Poisot T, Ouellet M, Mollentze N, Farrell M, Becker D, Brierley L, Albery G, Gibb R, Seifert S, Carlson C. Network embedding unveils the hidden interactions in the mammalian virome. Patterns 2023, 4: 100738. PMID: 37409053, PMCID: PMC10318366, DOI: 10.1016/j.patter.2023.100738.Peer-Reviewed Original ResearchMammalian viromeViral genomic featuresHost-virus interactionsGraph embeddingGenomic featuresNetwork science problemUnder-characterizedFundamental biologyHuman infectionsViromeRecommender systemsDiscovery effortsAmazon basinDisease emergenceHidden interactionsImputation algorithmData biasNetworkLinear filterScience problems
2022
A minimum data standard for vector competence experiments
Wu V, Chen B, Christofferson R, Ebel G, Fagre A, Gallichotte E, Sweeny A, Carlson C, Ryan S. A minimum data standard for vector competence experiments. Scientific Data 2022, 9: 634. PMID: 36261651, PMCID: PMC9582208, DOI: 10.1038/s41597-022-01741-4.Peer-Reviewed Original Research